tag:joss.theoj.org,2005:/papers/tagged/tomographyJournal of Open Source Software2024-02-09T13:51:24ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/50422024-02-09T13:51:24Z2024-02-10T00:01:17Zelsa: an elegant framework for tomographic reconstructionaccepted0.8.02023-12-20 14:16:50 UTC942024-02-09 13:51:24 UTC920246174DavidFrankDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0009-0006-4989-2144JonasJeltenDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0002-5167-2419TobiasLasserDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0001-5669-920X10.21105/joss.06174https://doi.org/10.5281/zenodo.10609174Python, C++, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06174.pdfComputed Tomography, X-ray Computed Tomography, Tomography, Tomographic Reconstruction, Inverse Problems, Software Frameworktag:joss.theoj.org,2005:Paper/45442024-01-19T09:43:47Z2024-01-21T09:05:49ZPATATO: a Python photoacoustic tomography analysis toolkitacceptedv0.5.02023-06-14 09:14:00 UTC932024-01-19 09:43:47 UTC920245686ThomasR.ElseCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0002-2652-4190JanekGröhlCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0002-5332-4856LinaHackerCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom, Department of Oncology, University of Oxford, United Kingdom0000-0001-5160-0952SarahE.BohndiekCRUK Cambridge Institute, University of Cambridge, United Kingdom, Department of Physics, University of Cambridge, United Kingdom0000-0003-0371-863510.21105/joss.05686https://doi.org/10.5281/zenodo.10255220Python, C++, Cuda, Chttps://joss.theoj.org/papers/10.21105/joss.05686.pdfPhotoacoustics, Imaging, Optoacoustics, MSOT, Reconstruction, Backprojection, Unmixingtag:joss.theoj.org,2005:Paper/39812023-04-02T06:32:18Z2023-04-03T00:02:57ZCiclope: micro Computed Tomography to Finite Elementsacceptedv1.2.02022-10-26 13:55:30 UTC842023-04-02 06:32:18 UTC820234952GianlucaIoriSynchrotron-light for Experimental Science and Applications in the Middle East, Allan, Jordan0000-0001-8611-3281GianluigiCrimiIRCCS Istituto Ortopedico Rizzoli, Bologna, ItalyEnricoSchileoIRCCS Istituto Ortopedico Rizzoli, Bologna, Italy0000-0003-3515-1231FulviaTaddeiIRCCS Istituto Ortopedico Rizzoli, Bologna, Italy0000-0002-8342-7434GiuliaFraterrigoIRCCS Istituto Ortopedico Rizzoli, Bologna, ItalyMartinoPaniSchool of Mechanical and Design Engineering, University of Portsmouth, United Kingdom0000-0002-5786-446210.21105/joss.04952https://doi.org/10.5281/zenodo.7716943MATLAB, Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04952.pdfcomputed tomography, finite elements, image processing, engineering, simulation, biomechanicstag:joss.theoj.org,2005:Paper/38992023-03-21T11:37:37Z2023-03-22T00:03:19ZAPAV: An Open-Source Python Package for Mass Spectrum Analysis in Atom Probe Tomographyacceptedv1.3.12022-09-15 20:15:21 UTC832023-03-21 11:37:37 UTC820234862JesseD.SmithDepartment of Materials Science and Engineering, University of North Texas, United States of America0000-0001-7402-6658MarcusL.YoungDepartment of Materials Science and Engineering, University of North Texas, United States of America0000-0002-4953-556210.21105/joss.04862https://doi.org/10.5281/zenodo.7738382Python, Cythonhttps://joss.theoj.org/papers/10.21105/joss.04862.pdfAtom Probe Tomography, Data analysistag:joss.theoj.org,2005:Paper/16752020-10-29T06:57:08Z2021-02-15T11:30:41ZOpen Source Optical Coherence Tomography Softwareacceptedv1.0.02020-05-22 18:22:03 UTC542020-10-29 06:57:08 UTC520202580MiroslavZabicInstitute of Quantum Optics, Leibniz University Hannover, Welfengarten 1, 30167 Hannover, Germany, Industrial and Biomedical Optics Department, Laser Zentrum Hannover e.V., Hollerithallee 8, 30419 Hannover, Germany0000-0002-4494-6127BenMatthiasIndustrial and Biomedical Optics Department, Laser Zentrum Hannover e.V., Hollerithallee 8, 30419 Hannover, GermanyAlexanderHeisterkampInstitute of Quantum Optics, Leibniz University Hannover, Welfengarten 1, 30167 Hannover, GermanyTammoRipkenIndustrial and Biomedical Optics Department, Laser Zentrum Hannover e.V., Hollerithallee 8, 30419 Hannover, Germany10.21105/joss.02580https://doi.org/10.5281/zenodo.4148992QMake, GLSL, C++, Cuda, Chttps://joss.theoj.org/papers/10.21105/joss.02580.pdfCUDA, Optical Coherence Tomographytag:joss.theoj.org,2005:Paper/11732019-10-09T18:19:52Z2021-02-15T11:31:45ZAXITOM: A Python package for reconstruction of axisymmetric tomograms acquired by a conical beamacceptedV0.1.22019-08-19 16:48:19 UTC422019-10-09 18:19:52 UTC420191704SindreNordmarkOlufsenStructural Impact Laboratory (SIMLab), Department of Structural Engineering, NTNU, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway10.21105/joss.01704https://doi.org/10.5281/zenodo.3466426Pythonhttps://joss.theoj.org/papers/10.21105/joss.01704.pdftomography, conical-beam, X-raytag:joss.theoj.org,2005:Paper/9012019-05-01T15:10:59Z2021-02-15T11:32:29ZPoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media ImagesacceptedV1.0.02019-02-23 15:01:03 UTC372019-05-01 15:10:59 UTC420191296JeffT.GostickDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada0000-0001-7736-7124ZohaibA.KhanDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada0000-0003-2115-7798ThomasG.TranterDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada, Department of Chemical Engineering, University College London, London, United Kingdom0000-0003-4721-5941MatthewD.r.KokDepartment of Chemical Engineering, University College London, London, United Kingdom, Department of Chemical Engineering, McGill University, Montreal, QC, Canada0000-0001-8410-9748MehrezAgnaouDepartment of Chemical Engineering, University of Waterloo, Waterloo, ON, Canada0000-0002-6635-080XMohammadaminSadeghiDepartment of Chemical Engineering, McGill University, Montreal, QC, Canada0000-0002-6756-9117RhodriJervisDepartment of Chemical Engineering, University College London, London, United Kingdom0000-0003-2784-780210.21105/joss.01296https://doi.org/10.5281/zenodo.2642818Pythonhttps://joss.theoj.org/papers/10.21105/joss.01296.pdfporous media, tomography, image analysistag:joss.theoj.org,2005:Paper/7582019-03-21T12:47:47Z2021-02-15T11:32:43Zopen_iA: A tool for processing and visual analysis of industrial computed tomography datasetsaccepted2018.122018-12-21 10:06:46 UTC352019-03-21 12:47:47 UTC420191185BernhardFröhlerUniversity of Applied Sciences Upper Austria, Research Group Computed Tomography, University of Vienna, Research Group Visualization and Data Analysis0000-0003-1271-0838JohannesWeissenböckUniversity of Applied Sciences Upper Austria, Research Group Computed Tomography, TU Wien, Visualization Working Group0000-0001-8062-4590MarcelSchiwarthUniversity of Applied Sciences Upper Austria, Research Group Computed Tomography0000-0003-2339-1879JohannKastnerUniversity of Applied Sciences Upper Austria, Research Group Computed Tomography0000-0002-3163-0916ChristophHeinzlUniversity of Applied Sciences Upper Austria, Research Group Computed Tomography0000-0002-3173-887110.21105/joss.01185https://doi.org/10.5281/zenodo.2591999Pythonhttps://joss.theoj.org/papers/10.21105/joss.01185.pdfC++, computed tomography, industrial computed tomography, image processing, volume processing, volume visualization, visual analyticstag:joss.theoj.org,2005:Paper/9022019-02-27T14:11:27Z2020-03-14T00:51:56Ztacmagic: Positron emission tomography analysis in Racceptedv0.2.02019-02-26 12:47:38 UTC342019-02-27 14:11:27 UTC420191281EricE.BrownDepartment of Psychiatry and Institute of Medical Science, University of Toronto, Toronto, Canada, Centre for Addiction and Mental Health, Toronto, Canada0000-0002-1575-260610.21105/joss.01281https://doi.org/10.5281/zenodo.2577947Rhttps://joss.theoj.org/papers/10.21105/joss.01281.pdfpositron emission tomography, biomedical imaging, neuroimaging, neuroscience, neuroinformaticstag:joss.theoj.org,2005:Paper/6562018-11-30T01:42:11Z2021-02-15T11:32:54ZIsing_OPV v4.0: Experimental Tomography Data Import, Interpretation, and Analysisacceptedv4.0.0-rc.22018-10-09 03:05:52 UTC312018-11-30 01:42:11 UTC320181072MichaelC.HeiberCenter for Hierarchical Materials Design (CHiMaD), Northwestern University, Evanston, Illinois 60208, USA0000-0002-1567-566310.21105/joss.01072https://doi.org/10.5281/zenodo.1710685C++https://joss.theoj.org/papers/10.21105/joss.01072.pdforganic photovoltaics, bulk heterojunction morphology, tomography, Ising model, phase separation, image analysis