tag:joss.theoj.org,2005:/papers/tagged/taggingJournal of Open Source Software2024-01-22T15:00:12ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48382024-01-22T15:00:12Z2024-01-23T11:55:19Zcstag and cstag-cli: tools for manipulating and visualizing cs tagsacceptedv1.0.42023-10-06 03:25:34 UTC932024-01-22 15:00:12 UTC920246066AkihiroKunoDepartment of Anatomy and Embryology, University of Tsukuba, Tsukuba, Ibaraki, Japan, Laboratory Animal Resource Center, Trans-border Medical Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan.0000-0002-4674-688210.21105/joss.06066https://doi.org/10.5281/zenodo.10544838Pythonhttps://joss.theoj.org/papers/10.21105/joss.06066.pdfpython, genomics, sequencing, bioinformaticstag:joss.theoj.org,2005:Paper/30212023-01-10T09:20:54Z2023-01-11T00:01:03ZTagging Latency Estimator: A Standalone Software for Estimating Latency of Event-Related Potentials in P300-based Brain-Computer Interfacesacceptedv02021-09-08 08:35:48 UTC812023-01-10 09:20:54 UTC820234114GrégoireH.CattanIBM, Cloud and Cognitive Software, Poland0000-0002-7515-0690CesarMendozaIHMTEK, France10.21105/joss.04114https://doi.org/10.5281/zenodo.7503787C#, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04114.pdfUnity, Event-Related Potential (ERP), P300, Brain-Computer Interface (BCI)tag:joss.theoj.org,2005:Paper/35222022-08-12T21:53:58Z2022-08-15T19:37:10ZGenerative DAGs as an Interface Into Probabilistic Programming with the R Package causactacceptedv0.4.12022-04-27 21:11:31 UTC762022-08-12 21:53:58 UTC720224415AdamJ.FleischhackerAdam Fleischhacker, JP Morgan Chase Faculty Fellow, University of Delaware, Newark, DE 197160000-0003-2871-4788ThiHong NhungNguyenInstitute for Financial Services Analytics, University of Delaware, Newark, DE 1971610.21105/joss.04415https://doi.org/10.5281/zenodo.6949489Rhttps://joss.theoj.org/papers/10.21105/joss.04415.pdfBayesian inference, probabilistic programming, graphical models, directed acyclic graphstag:joss.theoj.org,2005:Paper/34452022-08-05T17:32:17Z2022-10-11T07:21:04ZGRAPL: A computational library for nonparametric structural causal modelling, analysis and inferenceacceptedv1.32022-03-29 00:23:34 UTC762022-08-05 17:32:17 UTC720224534MaxA.LittleSchool of Computer Science, University of Birmingham, UK, MIT, Cambridge, MA, USA0000-0002-1507-382210.21105/joss.04534https://doi.org/10.5281/zenodo.6959433Pythonhttps://joss.theoj.org/papers/10.21105/joss.04534.pdfstructural causal models, causal inference, DAGs, ADMGstag:joss.theoj.org,2005:Paper/31172022-01-14T14:04:16Z2022-01-15T00:01:27ZcompareMCMCs: An R package for studying MCMC efficiencyaccepted0.5.02021-10-18 20:34:22 UTC692022-01-14 14:04:16 UTC720223844Perryde ValpineUniversity of California, BerkeleySallyPaganinUniversity of California, BerkeleyDanielTurekWilliams College10.21105/joss.03844https://doi.org/10.5281/zenodo.5842623Rhttps://joss.theoj.org/papers/10.21105/joss.03844.pdfstatistics, Markov chain Monte Carlo, nimble, JAGStag:joss.theoj.org,2005:Paper/28882021-12-10T17:52:19Z2021-12-19T12:03:28ZTaguette: open-source qualitative data analysisaccepted1.0.02021-07-17 19:18:55 UTC682021-12-10 17:52:19 UTC620213522RémiRampinIndependent Researcher0000-0002-0524-2282VickyRampinIndependent Researcher0000-0003-4298-168X10.21105/joss.03522https://doi.org/10.5281/zenodo.5574555Python, Makohttps://joss.theoj.org/papers/10.21105/joss.03522.pdfqualitative, qualitative data analysis, qual, document, text, tagging, tags, coding, highlights, notes, text-analysis, highlighting, caqdas, python, SQLitetag:joss.theoj.org,2005:Paper/30842021-12-01T01:50:50Z2021-12-02T00:02:27ZThe jagstargets R package: a reproducible workflow framework for Bayesian data analysis with JAGSaccepted0.0.12021-09-28 02:14:54 UTC682021-12-01 01:50:50 UTC620213877WilliamMichaelLandauEli Lilly and Company0000-0003-1878-325310.21105/joss.03877https://doi.org/10.5281/zenodo.5745858Rhttps://joss.theoj.org/papers/10.21105/joss.03877.pdfreproducibility, high-performance computing, pipeline, workflow, Make, Bayesian, JAGStag:joss.theoj.org,2005:Paper/9312019-06-24T13:53:18Z2021-02-15T11:32:23Ztreex: a Python package for manipulating rooted treesacceptedv1.1.32019-03-18 15:54:42 UTC382019-06-24 13:53:18 UTC420191351RomainAzaisLaboratoire Reproduction et Developpement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Inria, F-69342, Lyon, France0000-0002-5234-1822GuillaumeCeruttiLaboratoire Reproduction et Developpement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Inria, F-69342, Lyon, France0000-0003-2003-9335DidierGemmerle;Universite de Lorraine, CNRS, IECL, F-54000 Nancy, FranceFlorianIngelsLaboratoire Reproduction et Developpement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Inria, F-69342, Lyon, France10.21105/joss.01351https://doi.org/10.5281/zenodo.3254416Pythonhttps://joss.theoj.org/papers/10.21105/joss.01351.pdftrees, DAG compression, coding processes, edit distance, self-nested approximation, visualizationtag:joss.theoj.org,2005:Paper/3222018-06-19T23:34:33Z2021-02-15T11:33:46Zkima: Exoplanet detection in radial velocitiesacceptedv1.0.02017-12-04 14:54:50 UTC262018-06-19 23:34:33 UTC32018487J.P.FariaInstituto de Astrofísica e Ciências do Espaço, Universidade do Porto, CAUP, Rua das Estrelas, 4150-762, Porto, Portugal, Departamento de Física e Astronomia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 4169-007, Porto, Portugal0000-0002-6728-244XN.C.SantosInstituto de Astrofísica e Ciências do Espaço, Universidade do Porto, CAUP, Rua das Estrelas, 4150-762, Porto, Portugal, Departamento de Física e Astronomia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 4169-007, Porto, PortugalP.FigueiraInstituto de Astrofísica e Ciências do Espaço, Universidade do Porto, CAUP, Rua das Estrelas, 4150-762, Porto, PortugalB.J.BrewerDepartment of Statistics, The University of Auckland, Private Bag 92019, Auckland 1142, New Zealand10.21105/joss.00487https://doi.org/10.6084/m9.figshare.6615350Python, C++https://joss.theoj.org/papers/10.21105/joss.00487.pdfexample, tags, for the papertag:joss.theoj.org,2005:Paper/4802018-04-27T10:14:38Z2020-03-14T00:51:59ZEndoMineR for the extraction of endoscopic and associated pathology data from medical reportsacceptedv1.0.02018-04-25 12:47:19 UTC242018-04-27 10:14:38 UTC32018701SebastianS.ZekiDepartment of Gastroenterology, St Thomas' Hospital, Westminster Bridge Bridge Road, London SE1 7EH0000-0003-1673-266310.21105/joss.00701https://doi.org/10.5281/zenodo.1232059Rhttps://joss.theoj.org/papers/10.21105/joss.00701.pdfexample, tags, for the paper