JOSS Papers: systems biology

All Papers
2520
 Published Papers
2245
 Active Papers
275
published Published about 2 months ago

BASICO: A simplified Python interface to COPASI

Python
@fbergmann
10.21105/joss.05553
published Published 9 months ago

Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape

Python Cython Jupyter Notebook
@ayush9pandey
10.21105/joss.05057
published Published over 1 year ago

PyBioPAX: biological pathway exchange in Python

Python
@bgyori
10.21105/joss.04136
published Published almost 2 years ago

Cacatoo: building, exploring, and sharing spatially structured models of biological systems

JavaScript
@bramvandijk88
10.21105/joss.03948
published Published about 2 years ago

A flexible search system for high-accuracy identification of biological entities and molecules

JavaScript
@maxkfranz
10.21105/joss.03756
published Published about 2 years ago

Heta compiler: a software tool for the development of large-scale QSP models and compilation into simulation formats

JavaScript M
@metelkin
10.21105/joss.03708
published Published over 2 years ago

OSTIR: open source translation initiation rate prediction

R Python
@jeffreybarrick
10.21105/joss.03362
published Published about 4 years ago

SBMLtoODEpy: A software program for converting SBML models into ODE models in Python

Jupyter Notebook JavaScript
@ashleefv
10.21105/joss.01643
published Published about 6 years ago

geneXplainR: An R interface for the geneXplain platform

R
@pstegma
10.21105/joss.00412
Displaying 9 papers

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ISSN 2475-9066