tag:joss.theoj.org,2005:/papers/tagged/synthetic%20biologyJournal of Open Source Software2023-03-09T10:43:20ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/40212023-03-09T10:43:20Z2023-03-10T00:04:42ZFast and flexible simulation and parameter estimation for synthetic biology using bioscrapeacceptedv1.22022-11-23 08:27:41 UTC832023-03-09 10:43:20 UTC820235057AyushPandeyControl and Dynamical Systems, California Institute of Technology, Pasadena, CA, USA0000-0003-3590-4459WilliamPooleAltos Labs, San Francisco, CA, USA0000-0002-2958-6776AnandhSwaminathanGhost Locomotion, Mountain View, CA, USA0000-0001-9935-6530VictoriaHsiaoAmyris, Emeryville, CA, USA0000-0001-9297-1522RichardM.MurrayControl and Dynamical Systems and Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA0000-0002-5785-748110.21105/joss.05057https://doi.org/10.5281/zenodo.7677726Python, Cython, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05057.pdfsynthetic biology, systems biology, deterministic and stochastic simulations, parameter inferencetag:joss.theoj.org,2005:Paper/27392021-08-22T19:59:26Z2021-08-23T02:13:38ZOSTIR: open source translation initiation rate predictionacceptedv1.0.42021-06-08 03:04:25 UTC642021-08-22 19:59:26 UTC620213362CameronT.RootsDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin0000-0001-6219-3168AlexandraLukasiewiczMcKetta Department of Chemical Engineering, The University of Texas at AustinJeffreyE.BarrickDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin0000-0003-0888-735810.21105/joss.03362https://doi.org/10.5281/zenodo.5227845R, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03362.pdfsynthetic biology, systems biology, bioengineering, ribosome binding site, translation, calculator