tag:joss.theoj.org,2005:/papers/tagged/spectrumJournal of Open Source Software2023-05-10T21:48:40ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/41792023-05-10T21:48:40Z2023-05-11T09:01:03Zmutyper: assigning and summarizing mutation types for analyzing germline mutation spectraacceptedv0.7.02023-01-24 22:40:00 UTC852023-05-10 21:48:40 UTC820235227WilliamS.DeWittDepartment of Electrical Engineering & Computer Sciences, University of California, Berkeley, CA, United States of America0000-0002-6802-9139LukeZhuDepartment of Bioengineering, University of Washington, Seattle, WA, United States of America0000-0002-6324-1464MitchellR.VollgerDepartment of Genome Sciences, University of Washington, Seattle, WA, United States of America0000-0002-8651-1615MichaelE.GoldbergDepartment of Genome Sciences, University of Washington, Seattle, WA, United States of America, Departments of Human Genetics and of Biomedical Informatics, University of Utah, Salt Lake City, UT, United States of America0000-0003-3310-6349AndreaTalentiThe Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, United Kingdom0000-0003-1309-3667AnnabelC.BeichmanDepartment of Genome Sciences, University of Washington, Seattle, WA, United States of America0000-0002-6991-587XKelleyHarrisDepartment of Genome Sciences, University of Washington, Seattle, WA, United States of America0000-0003-0302-252310.21105/joss.05227https://doi.org/10.5281/zenodo.7921769Pythonhttps://joss.theoj.org/papers/10.21105/joss.05227.pdfgenomics, computational biology, bioinformatics, mutation spectrum, pythontag:joss.theoj.org,2005:Paper/38992023-03-21T11:37:37Z2023-03-22T00:03:19ZAPAV: An Open-Source Python Package for Mass Spectrum Analysis in Atom Probe Tomographyacceptedv1.3.12022-09-15 20:15:21 UTC832023-03-21 11:37:37 UTC820234862JesseD.SmithDepartment of Materials Science and Engineering, University of North Texas, United States of America0000-0001-7402-6658MarcusL.YoungDepartment of Materials Science and Engineering, University of North Texas, United States of America0000-0002-4953-556210.21105/joss.04862https://doi.org/10.5281/zenodo.7738382Python, Cythonhttps://joss.theoj.org/papers/10.21105/joss.04862.pdfAtom Probe Tomography, Data analysistag:joss.theoj.org,2005:Paper/31622022-07-12T10:00:56Z2022-07-12T10:02:12ZlimHaloPT: A Numerical Package for Accurate Modeling of Line Intensity Power Spectrumacceptedv1.0.02021-11-09 10:29:27 UTC752022-07-12 10:00:56 UTC720224173AzadehMoradinezhad DizgahDepartment of Theoretical Physics, University of Geneva, 24 quai Ernest Ansermet, 1211 Geneva 4, Switzerland0000-0001-8841-9989AlbertoVallinottoIndependent Researcher, ItalyFarnikNikakhtarDepartment of Physics and Astronomy, University of Pennsylvania, 209 S. 33rd St., Philadelphia, PA 19104, USA0000-0002-3641-436610.21105/joss.04173https://doi.org/10.5281/zenodo.6762607Chttps://joss.theoj.org/papers/10.21105/joss.04173.pdfC language, cosmology, intensity mappingtag:joss.theoj.org,2005:Paper/25802021-05-17T21:13:13Z2021-05-18T00:00:34ZMCALF: Multi-Component Atmospheric Line Fittingacceptedv0.2.02021-04-19 19:08:29 UTC612021-05-17 21:13:13 UTC620213265ConorD.MacBrideAstrophysics Research Centre, School of Mathematics and Physics, Queen's University Belfast, Belfast, BT7 1NN, UK0000-0002-9901-8723DavidB.JessAstrophysics Research Centre, School of Mathematics and Physics, Queen's University Belfast, Belfast, BT7 1NN, UK, Department of Physics and Astronomy, California State University Northridge, Northridge, CA 91330, U.S.A.0000-0002-9155-803910.21105/joss.03265https://doi.org/10.5281/zenodo.4767888Pythonhttps://joss.theoj.org/papers/10.21105/joss.03265.pdfastronomy, solar physics, spectrum, spectra, fitting, absorption, emission, voigttag:joss.theoj.org,2005:Paper/15862020-09-04T18:34:39Z2021-02-15T11:30:53ZAutomated Sleep Stage Scoring Using k-Nearest Neighbors Classifieracceptedv1.0.02020-05-20 11:18:42 UTC532020-09-04 18:34:39 UTC520202377TamásKissGlobal Research and Development, Pfizer Inc, Groton, CT, USA, Department of Computational Sciences, Wigner Research Centre for Physics, Budapest, Hungary0000-0001-6360-0714StephenMorairtyCenter for Neuroscience, SRI International, Menlo Park, CA, USA0000-0002-0781-1645MichaelSchwartzCenter for Neuroscience, SRI International, Menlo Park, CA, USA0000-0002-5464-638XThomasS.\KilduffCenter for Neuroscience, SRI International, Menlo Park, CA, USA0000-0002-6823-0094DerekL.\BuhlGlobal Research and Development, Pfizer Inc, Groton, CT, USA, Current affiliation -- Takeda Pharmaceuticals, Inc., Cambridge, MA, USA0000-0003-4433-7150DmitriVolfsonGlobal Research and Development, Pfizer Inc, Groton, CT, USA, Current affiliation -- Takeda Pharmaceuticals, Inc., Cambridge, MA, USA0000-0002-5167-783410.21105/joss.02377https://doi.org/10.5281/zenodo.4009178Matlabhttps://joss.theoj.org/papers/10.21105/joss.02377.pdfSupervised clustering, Polysomnography, Power spectrum, MATLABtag:joss.theoj.org,2005:Paper/13432020-03-06T17:18:00Z2021-02-15T11:31:20ZSAILS: Spectral Analysis In Linear Systemsacceptedv0.1.12019-11-22 17:01:56 UTC472020-03-06 17:18:00 UTC520201982AndrewJ.QuinnOxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, UK.0000-0003-2267-9897MarkHymersYork NeuroImaging Centre, Department of Psychology, University of York, UK.10.21105/joss.01982https://doi.org/10.5281/zenodo.3698334Pythonhttps://joss.theoj.org/papers/10.21105/joss.01982.pdfSpectrum, Dynamics, Connectivity, Modaltag:joss.theoj.org,2005:Paper/12912020-01-09T01:15:44Z2021-02-15T11:31:30Zfathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithmsacceptedv0.12019-10-13 13:45:36 UTC452020-01-09 01:15:44 UTC520201828StefanoBianchiDepartment of Mathematics and Physics, Roma Tre University0000-0001-6729-865510.21105/joss.01828https://doi.org/10.5281/zenodo.3601637Python, C, C++https://joss.theoj.org/papers/10.21105/joss.01828.pdfCython, Detrended fluctuation analysis, Multifractal spectrumtag:joss.theoj.org,2005:Paper/5632018-08-21T01:25:27Z2021-02-15T11:33:11Zpowerbox: A Python package for creating structured fields with isotropic power spectraacceptedv0.5.52018-07-23 03:36:43 UTC282018-08-21 01:25:27 UTC32018850StevenG.MurrayInternational Centre for Radio Astronomy Research (ICRAR), Curtin University, Bentley, WA 6102, Australia, ARC Centre of Excellence for All-Sky Astrophysics in 3 Dimensions (ASTRO 3D)0000-0003-3059-382310.21105/joss.00850https://doi.org/10.5281/zenodo.1400822Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.00850.pdfastronomy, power spectrum, signal analysistag:joss.theoj.org,2005:Paper/2422017-10-27T00:00:00Z2021-02-15T11:34:00Z'Spectrum': Spectral Analysis in Pythonaccepted0.6.22017-07-23 08:59:17 UTC182017-10-27 00:00:00 UTC22017348ThomasCokelaerInstitut Pasteur - Bioinformatics and Biostatistics Hub - C3BI, USR 3756 IP CNRS - Paris, France0000-0001-6286-1138JuergenHaschRobert Bosch GmbH: Renningen, Baden-Württemberg, Germany0000-0002-9457-122010.21105/joss.00348https://doi.org/10.5281/zenodo.1037268Python, Chttps://joss.theoj.org/papers/10.21105/joss.00348.pdfspectral analysis, periodogram, yule-walker, multi-tapering, burg, ARMA, eigen-values, tapering windows