JOSS Papers: single-cell

All Papers
3128
 Published Papers
2801
 Active Papers
327
published Published 25 days ago

APackOfTheClones: Visualization of clonal expansion with circle packing

R C++
@Qile0317
10.21105/joss.06868
published Published 10 months ago

HistoJS: Web-Based Analytical Tool for Advancing Multiplexed Images

Python JavaScript PHP
@Mmasoud1
10.21105/joss.06317
published Published over 1 year ago

Powering single-cell analyses in the browser with WebAssembly

JavaScript
@LTLA
10.21105/joss.05603
published Published over 2 years ago

MitoHEAR: an R package for the estimation and downstream statistical analysis of the mitochondrial DNA heteroplasmy calculated from single-cell datasets

R
@gabrielelubatti
10.21105/joss.04265
published Published over 3 years ago

starfish: scalable pipelines for image-based transcriptomics

Jupyter Notebook Python wdl
@neuromusic
10.21105/joss.02440
published Published about 4 years ago

cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files

Python
@lincoln-harris
10.21105/joss.02432
published Published over 4 years ago

scTree: An R package to generate antibody-compatible classifiers from single-cell sequencing data

R
@jspaezp
10.21105/joss.02061
published Published about 5 years ago

alignparse: A Python package for parsing complex features from high-throughput long-read sequencing

Python Jupyter Notebook
@jbloom
10.21105/joss.01915
published Published over 5 years ago

The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq

R XQuery
@ShixiangWang
10.21105/joss.01627
Displaying 9 papers

Journal of Open Source Software is an affiliate of the Open Source Initiative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Table of Contents
Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066