JOSS Papers: single-cell

Published Papers

published Published 2 months ago

nf-core/cutandrun: A Nextflow pipeline for the analysis of CUT&RUN, CUT&Tag and TIP-seq datasets

Awk Python Perl Nextflow

@tamara-hodgetts

10.21105/joss.09672

published Published 2 months ago

FastPCA: An R package for fast singular value decomposition

R C++ Perl Python

10.21105/joss.09706

published Published 3 months ago

MeDUSA: Taming your metabolic datasets using an R-package for data processing of Direct Infusion Untarged Single-cell Analysis

R

10.21105/joss.08993

published Published 4 months ago

SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging

Jupyter Notebook

10.21105/joss.08787

published Published 9 months ago

scmorph: a Python package for analysing single-cell morphological profiles

Python R

10.21105/joss.08324

published Published over 1 year ago

APackOfTheClones: Visualization of clonal expansion with circle packing

R C++

10.21105/joss.06868

published Published over 2 years ago

HistoJS: Web-Based Analytical Tool for Advancing Multiplexed Images

Python JavaScript PHP

10.21105/joss.06317

published Published over 2 years ago

Powering single-cell analyses in the browser with WebAssembly

JavaScript

10.21105/joss.05603

published Published almost 4 years ago

MitoHEAR: an R package for the estimation and downstream statistical analysis of the mitochondrial DNA heteroplasmy calculated from single-cell datasets

R

@gabrielelubatti

10.21105/joss.04265

published Published about 5 years ago

starfish: scalable pipelines for image-based transcriptomics

Jupyter Notebook Python wdl

10.21105/joss.02440

Displaying papers 1 - 10 of 14 in total

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