tag:joss.theoj.org,2005:/papers/tagged/setJournal of Open Source Software2024-03-05T15:11:10ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48622024-03-05T15:11:10Z2024-03-06T16:03:15ZPDOPT: A Python library for Probabilistic Design space exploration and OPTimisationacceptedv0.452023-10-23 15:08:48 UTC952024-03-05 15:11:10 UTC920246110AndreaSpinelliCentre for Propulsion and Thermal Power, Cranfield University, MK430AL, UK0000-0002-3064-3387TimoleonKipourosCentre for Propulsion and Thermal Power, Cranfield University, MK430AL, UK0000-0003-3392-283X10.21105/joss.06110https://doi.org/10.5281/zenodo.10732017Pythonhttps://joss.theoj.org/papers/10.21105/joss.06110.pdfComputational Engineering, Design Space Exploration, Set-Based Design, Design Uncertainty, Multi-Objective Optimizationtag:joss.theoj.org,2005:Paper/47242023-10-30T14:04:21Z2023-10-31T00:00:33ZJetNet: A Python package for accessing open datasets and benchmarking machine learning methods in high energy physicsacceptedv0.2.32023-08-29 16:02:38 UTC902023-10-30 14:04:21 UTC820235789RaghavKansalUC San Diego, USA, Fermilab, USA0000-0003-2445-1060CarlosParejaUC San Diego, USA0000-0002-9022-2349ZichunHaoCalifornia Institute of Technology, USA0000-0002-5624-4907JavierDuarteUC San Diego, USA0000-0002-5076-709610.21105/joss.05789https://doi.org/10.5281/zenodo.10044601Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05789.pdfPyTorch, high energy physics, machine learning, jetstag:joss.theoj.org,2005:Paper/43102023-10-24T14:44:56Z2024-02-07T13:20:12Zgesel: a JavaScript package for client-side gene set enrichmentaccepted0.2.32023-03-15 18:20:39 UTC902023-10-24 14:44:56 UTC820235777AaronTin LongLunGenentech Inc., South San Francisco, United States of America0000-0002-3564-4813JayaramKancherlaGenentech Inc., South San Francisco, United States of America0000-0001-5855-503110.21105/joss.05777https://doi.org/10.5281/zenodo.10032294JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05777.pdfbioinformaticstag:joss.theoj.org,2005:Paper/43572023-06-09T14:53:05Z2023-06-10T00:01:45ZSESAMI APP: An Accessible Interface for Surface Area Calculation of Materials from Adsorption Isothermsacceptedv1.0.02023-03-21 12:48:25 UTC862023-06-09 14:53:05 UTC820235429GianmarcoG.TerronesDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, United States of America0000-0001-5360-165XYuChenSchool of Chemical Engineering, Pusan National University, Busan, South Korea0000-0002-6530-0974ArchitDatarWilliam G. Lowrie Department of Chemical and Biomolecular Engineering, The Ohio State University, Columbus, OH, United States of America0000-0002-5276-0103Li-ChiangLinDepartment of Chemical Engineering, National Taiwan University, Taipei, Taiwan0000-0002-2821-9501HeatherJ.KulikDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, United States of America, Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, United States of America0000-0001-9342-0191YongchulG.ChungSchool of Chemical Engineering, Pusan National University, Busan, South Korea0000-0002-7756-058910.21105/joss.05429https://doi.org/10.5281/zenodo.7953483Pythonhttps://joss.theoj.org/papers/10.21105/joss.05429.pdfSESAMI, surface area, isotherm, BET, BET+ESW, machine learningtag:joss.theoj.org,2005:Paper/37622023-03-01T15:08:36Z2023-03-04T00:04:00ZThe ppmData R-package for setting up spatial point process modelsacceptedv1.0.02022-08-03 11:09:45 UTC832023-03-01 15:08:36 UTC820234771SkiptonN.c.WoolleyEnvironment, CSIRO, School of Ecosystems and Forestry Science, The University of Melbourne0000-0001-7022-0509ScottD.FosterData61, CSIRO0000-0002-6719-800210.21105/joss.04771https://doi.org/10.5281/zenodo.7679406R, C++https://joss.theoj.org/papers/10.21105/joss.04771.pdfPoint Process, Quasi-random Sampling, Dirichlet Tesselation, Inhomogeneous Poisson Point Process, R packagetag:joss.theoj.org,2005:Paper/38152023-02-13T13:47:30Z2023-02-14T00:00:52Ztpcp: Tiny Pipelines for Complex Problems - A set of framework independent helpers for algorithms development and evaluationacceptedv0.9.02022-08-11 08:06:31 UTC822023-02-13 13:47:30 UTC820234953ArneKüderleMachine Learning and Data Analytics Lab (MaD Lab), Department Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)0000-0002-5686-281XRobertRicherMachine Learning and Data Analytics Lab (MaD Lab), Department Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)0000-0003-0272-5403RaulC.SîmpetruNeuromuscular Physiology and Neural Interfacing (N-squared) Laboratory, Department Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)0000-0003-0455-0168BjoernM.EskofierMachine Learning and Data Analytics Lab (MaD Lab), Department Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)0000-0002-0417-033610.21105/joss.04953https://doi.org/10.17605/OSF.IO/GKY2UPythonhttps://joss.theoj.org/papers/10.21105/joss.04953.pdfMachine Learning, Data Analysistag:joss.theoj.org,2005:Paper/29142022-08-01T11:06:24Z2022-08-02T00:01:03ZCleanX: A Python library for data cleaning of large sets of radiology imagesacceptedv0.1.92021-07-31 07:04:37 UTC762022-08-01 11:06:24 UTC720223632CandaceMakedaMooreNetherlands eScience Center, Amsterdam, Netherlands0000-0003-1672-7565AndrewMurphyDepartment of Medical Imaging, Princess Alexandra Hospital, Brisbane, QLD, Australia0000-0002-7710-6095OlegSivokonBright Computing / NVIDIA, NetherlandsPatriceJ.MusokeTemple University0000-0002-8379-513010.21105/joss.03632https://doi.org/10.5281/zenodo.6331739Roff, Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03632.pdfradiology, imaging, medical imagingtag:joss.theoj.org,2005:Paper/31292022-06-01T16:46:52Z2022-06-02T00:01:07ZTorque-limited simple pendulum: A toolkit for getting familiar with control algorithms in underactuated roboticsacceptedv1.0.02021-10-22 16:52:25 UTC742022-06-01 16:46:52 UTC720223884FelixWiebeDFKI GmbH Robotics Innovation Center, Bremen, Germany0000-0002-2195-9697JonathanBabelDFKI GmbH Robotics Innovation Center, Bremen, GermanyShiveshKumarDFKI GmbH Robotics Innovation Center, Bremen, Germany0000-0002-6254-3882ShubhamVyasDFKI GmbH Robotics Innovation Center, Bremen, GermanyDanielHarnackDFKI GmbH Robotics Innovation Center, Bremen, GermanyMelyaBoukheddimiWorking Group Robotics, University of Bremen, Bremen, GermanyMihaelaPopescuWorking Group Robotics, University of Bremen, Bremen, GermanyFrankKirchnerDFKI GmbH Robotics Innovation Center, Bremen, Germany, Working Group Robotics, University of Bremen, Bremen, Germany10.21105/joss.03884https://doi.org/10.5281/zenodo.6498036Pythonhttps://joss.theoj.org/papers/10.21105/joss.03884.pdfrobotics, underactuated, pendulum, torque-limitedtag:joss.theoj.org,2005:Paper/30802021-11-17T07:05:47Z2021-11-18T00:02:25ZEDO.js: A comprehensive JavaScript library for interaction with musical set theory in any tuningacceptedv1.2.132021-09-23 17:22:17 UTC672021-11-17 07:05:47 UTC620213784MichaelSeltenreichDepartment of Music, New York University, New York, New York 100030000-0002-6061-067410.21105/joss.03784https://doi.org/10.5281/zenodo.5705161JavaScripthttps://joss.theoj.org/papers/10.21105/joss.03784.pdfmusic theory, music analysis, music perception, set theory, diatonic set theory, equal divisions of the octave, TETtag:joss.theoj.org,2005:Paper/29822021-10-27T15:45:53Z2021-10-28T00:06:23ZOpfi: A Python package for identifying gene clusters in large genomics and metagenomics data setsaccepted0.1.02021-08-20 03:05:15 UTC662021-10-27 15:45:53 UTC620213678AlexisM.HillDepartment of Integrative Biology, The University of Texas at Austin, Austin, Texas 78712, USAJamesR.RybarskiDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USAKuangHuDepartment of Integrative Biology, The University of Texas at Austin, Austin, Texas 78712, USA, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USAIlyaJ.FinkelsteinDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USA, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, 78712, USAClausO.WilkeDepartment of Integrative Biology, The University of Texas at Austin, Austin, Texas 78712, USA10.21105/joss.03678https://doi.org/10.5281/zenodo.5601741Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.03678.pdfbioinformatics, metagenomics, gene cluster analysis