JOSS Papers: sequences

All Papers
2275
 Published Papers
2038
 Active Papers
237
published Published about 2 years ago

starfish: scalable pipelines for image-based transcriptomics

Jupyter Notebook Python wdl
@neuromusic
10.21105/joss.02440
published Published over 2 years ago

Parent-map: analysis of parental contributions to evolved or engineered protein or DNA sequences

Python
@damienmarsic
10.21105/joss.02864
published Published about 3 years ago

scTree: An R package to generate antibody-compatible classifiers from single-cell sequencing data

R
@jspaezp
10.21105/joss.02061
published Published about 3 years ago

covtobed: a simple and fast tool to extract coverage tracks from BAM files

C++
@telatin
10.21105/joss.02119
published Published over 3 years ago

fqfa: A pure Python package for genomic sequence files

Python
@afrubin
10.21105/joss.02076
published Published over 3 years ago

DAFSA: a Python library for Deterministic Acyclic Finite State Automata

Python
@tresoldi
10.21105/joss.01986
published Published over 3 years ago

“Blaster” – a graphical user interface for common sequence analysis tools

Python
@snowformatics
10.21105/joss.01411
published Published over 3 years ago

alignparse: A Python package for parsing complex features from high-throughput long-read sequencing

Python Jupyter Notebook
@jbloom
10.21105/joss.01915
published Published over 3 years ago

Mashtree: a rapid comparison of whole genome sequence files

Perl
@lskatz
10.21105/joss.01762
published Published over 3 years ago

PyPulseq: A Python Package for MRI Pulse Sequence Design

Python
@imr-framework
10.21105/joss.01725
Displaying papers 11 - 20 of 43 in total

Journal of Open Source Software is an affiliate of the Open Source Inititative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066