JOSS Papers: sequences

Published Papers

published Published 30 days ago

perbase: A performant per-base sequencing metrics toolkit with accurate handling of complex alignments

Python Rust

10.21105/joss.09774

published Published 30 days ago

scoup: Simulate Codon Sequences with Darwinian Selection Incorporated as an Ornstein-Uhlenbeck Process

R Visual Basic 6.0

10.21105/joss.09797

published Published about 2 months ago

pyDARTdiags: A Python package for manipulating observation sequences and calculating observation-space diagnostics for the Data Assimilation Research Testbed (DART)

Python

@hkershaw-brown

10.21105/joss.09439

published Published 3 months ago

QMCPy: A Python Framework for (Quasi-)Monte Carlo Algorithms

Python C

10.21105/joss.09705

published Published 3 months ago

Blini: lightweight nucleotide sequence search and dereplication

Go Python

10.21105/joss.09494

published Published 8 months ago

Gene Fetch: A Python tool for sequence retrieval from GenBank across the tree of life

Python

10.21105/joss.08456

published Published 10 months ago

grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions

Rust

10.21105/joss.08048

published Published 10 months ago

<code>diverse-seq</code>: an application for alignment-free selecting and clustering biological sequences

Python Jupyter Notebook

10.21105/joss.07765

published Published 11 months ago

target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files.

Python Nextflow Groovy

10.21105/joss.07608

published Published over 1 year ago

Pycashier: cash in on DNA barcode tags

Python

10.21105/joss.06891

Displaying papers 1 - 10 of 62 in total

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