published Published about 2 months ago
QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data
Jinja Python
published Published about 2 months ago
Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance
Python Nextflow
published Published 5 months ago
SeqPanther: Sequence manipulation and mutation statistics toolset
Python
published Published 9 months ago
Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases
Python
published Published about 1 year ago
btllib: A C++ library with Python interface for efficient genomic sequence processing
Python C R
published Published about 1 year ago
VPsearch: fast exact sequence similarity search for genomic sequences
Python Cython C++
published Published over 1 year ago
Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs
Python
published Published over 1 year ago
ROCK: digital normalization of whole genome sequencing data
M4 C++
published Published over 1 year ago