JOSS Papers: sequence

All Papers
3553
 Published Papers
3084
 Active Papers
469
published Published over 1 year ago

QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data

Jinja Python
@ManavalanG
10.21105/joss.05313
published Published over 1 year ago

Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance

Python Nextflow
@jhayer
10.21105/joss.05397
published Published almost 2 years ago

SeqPanther: Sequence manipulation and mutation statistics toolset

Python
@jsan4christ
10.21105/joss.05305
published Published about 2 years ago

smmR: A Semi-Markov R package

R C++
@corentin-dev
10.21105/joss.04365
published Published over 2 years ago

Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases

Python
@Robaina
10.21105/joss.05289
published Published over 2 years ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R
@vlad0x00
10.21105/joss.04720
published Published almost 3 years ago

VPsearch: fast exact sequence similarity search for genomic sequences

Python Cython C++
@jvkersch
10.21105/joss.04236
published Published about 3 years ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Python
@milnus
10.21105/joss.04369
published Published about 3 years ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published over 3 years ago

helayo: Reconstructing Sanskrit texts from manuscript witnesses

Haskell JavaScript XSLT
@chchch
10.21105/joss.04022
Displaying papers 11 - 20 of 56 in total

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ISSN 2475-9066