JOSS Papers: sequence

All Papers
3006
 Published Papers
2685
 Active Papers
321
published Published over 1 year ago

Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases

Python
@Robaina
10.21105/joss.05289
published Published almost 2 years ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R
@vlad0x00
10.21105/joss.04720
published Published almost 2 years ago

VPsearch: fast exact sequence similarity search for genomic sequences

Python Cython C++
@jvkersch
10.21105/joss.04236
published Published about 2 years ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Python
@milnus
10.21105/joss.04369
published Published over 2 years ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published over 2 years ago

helayo: Reconstructing Sanskrit texts from manuscript witnesses

Haskell JavaScript XSLT
@chchch
10.21105/joss.04022
published Published over 2 years ago

Rasusa: Randomly subsample sequencing reads to a specified coverage

Rust
@mbhall88
10.21105/joss.03941
published Published over 2 years ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics

R
@chrisamiller
10.21105/joss.03722
published Published almost 3 years ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published over 3 years ago

starfish: scalable pipelines for image-based transcriptomics

Jupyter Notebook Python wdl
@neuromusic
10.21105/joss.02440
Displaying papers 11 - 20 of 52 in total

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ISSN 2475-9066