JOSS Papers: sequence alignment

All Papers
4084
 Published Papers
3706
 Active Papers
378
published Published 6 months ago

perbase: A performant per-base sequencing metrics toolkit with accurate handling of complex alignments

Python Rust
@sstadick
10.21105/joss.09774
published Published over 1 year ago

<code>diverse-seq</code>: an application for alignment-free selecting and clustering biological sequences

Python Jupyter Notebook
@GavinHuttley
10.21105/joss.07765
published Published over 4 years ago

helayo: Reconstructing Sanskrit texts from manuscript witnesses

Haskell JavaScript XSLT
@chchch
10.21105/joss.04022
published Published almost 5 years ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published almost 7 years ago

Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments

Python
@marekborowiec
10.21105/joss.01635
published Published about 7 years ago

Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer

JavaScript
@IbrahimTanyalcin
10.21105/joss.01407
published Published over 7 years ago

rGUIDANCE – alignment confidence score computation in R

R C++
@FranzKrah
10.21105/joss.01350
published Published almost 8 years ago

alv: a console-based viewer for molecular sequence alignments

Python
@arvestad
10.21105/joss.00955
published Published over 8 years ago

Visualizing genome synteny with xmatchview

Python
@warrenlr
10.21105/joss.00497
published Published about 9 years ago

Kindel: indel-aware consensus for nucleotide sequence alignments

Python Jupyter Notebook
@bede
10.21105/joss.00282
Displaying 10 papers

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ISSN 2475-9066