JOSS Papers: sequence

Published Papers

published Published 11 days ago

PileupCaller: A command-line tool to sample genotypes from low-coverage sequencing data of ancient DNA

Haskell D Python

10.21105/joss.08634

published Published 12 days ago

Enhancing short-read sequencing simulation: Updates to NEAT

Python

10.21105/joss.09056

published Published 2 months ago

perbase: A performant per-base sequencing metrics toolkit with accurate handling of complex alignments

Python Rust

10.21105/joss.09774

published Published 2 months ago

scoup: Simulate Codon Sequences with Darwinian Selection Incorporated as an Ornstein-Uhlenbeck Process

R Visual Basic 6.0

10.21105/joss.09797

published Published 3 months ago

pyDARTdiags: A Python package for manipulating observation sequences and calculating observation-space diagnostics for the Data Assimilation Research Testbed (DART)

Python

@hkershaw-brown

10.21105/joss.09439

published Published 4 months ago

QMCPy: A Python Framework for (Quasi-)Monte Carlo Algorithms

Python C

10.21105/joss.09705

published Published 4 months ago

Blini: lightweight nucleotide sequence search and dereplication

Go Python

10.21105/joss.09494

published Published 9 months ago

Gene Fetch: A Python tool for sequence retrieval from GenBank across the tree of life

Python

10.21105/joss.08456

published Published 11 months ago

grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions

Rust

10.21105/joss.08048

published Published 11 months ago

<code>diverse-seq</code>: an application for alignment-free selecting and clustering biological sequences

Python Jupyter Notebook

10.21105/joss.07765

Displaying papers 1 - 10 of 64 in total

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