JOSS Papers: sequence

All Papers
2104
 Published Papers
1899
 Active Papers
205
published Published 3 months ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R
@vlad0x00
10.21105/joss.04720
published Published 4 months ago

VPsearch: fast exact sequence similarity search for genomic sequences

Dockerfile Python Cython C++
@jvkersch
10.21105/joss.04236
published Published 7 months ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Dockerfile Python
@milnus
10.21105/joss.04369
published Published 9 months ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published 11 months ago

helayo: Reconstructing Sanskrit texts from manuscript witnesses

Haskell JavaScript XSLT
@chchch
10.21105/joss.04022
published Published about 1 year ago

Rasusa: Randomly subsample sequencing reads to a specified coverage

Rust
@mbhall88
10.21105/joss.03941
published Published about 1 year ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics

R
@chrisamiller
10.21105/joss.03722
published Published about 1 year ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published almost 2 years ago

starfish: scalable pipelines for image-based transcriptomics

Jupyter Notebook Python wdl
@neuromusic
10.21105/joss.02440
published Published about 2 years ago

Parent-map: analysis of parental contributions to evolved or engineered protein or DNA sequences

Python
@damienmarsic
10.21105/joss.02864
Displaying papers 1 - 10 of 41 in total

Journal of Open Source Software is an affiliate of the Open Source Inititative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066