tag:joss.theoj.org,2005:/papers/tagged/refitsJournal of Open Source Software2023-10-31T15:03:59ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42052023-10-31T15:03:59Z2023-11-01T00:00:33ZPeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cyclingacceptedv23.022023-02-14 00:23:22 UTC902023-10-31 15:03:59 UTC820235450LucasEsclapezHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-2438-7292MarcDayHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-1711-3963JohnBellCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0002-5749-334XAnneFeldenCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0009-0006-2724-4461CandaceGiletIndependent Researcher, USARayGroutHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-1760-8747MarcHenryde FrahanHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0001-7742-1565EmmanuelMotheauCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0003-1968-1611AndrewNonakaCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0003-1791-0265LandonOwenSandia National Laboratory, USABrucePerryHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-9150-8103JonRoodHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0002-7513-3225NicolasWimerHigh Performance Algorithms and Complex Fluids, National Renewable Energy Laboratory, USA0000-0001-5083-0799WeiqunZhangCenter for Computational Sciences and Engineering, Lawrence Berkeley National Laboratory, USA0000-0001-8092-197410.21105/joss.05450https://doi.org/10.5281/zenodo.10056232C++, Roffhttps://joss.theoj.org/papers/10.21105/joss.05450.pdfadaptive mesh refinement, hydrodynamics, combustion, reactions, ExaScale, CFD, low-Mach numbertag:joss.theoj.org,2005:Paper/33352023-04-21T16:59:33Z2023-04-22T00:02:29ZFEM_2D: A Rust Package for 2D Finite Element Method Computations with Extensive Support for hp-refinementaccepted0.1.02022-02-13 23:19:40 UTC842023-04-21 16:59:33 UTC820234172JeremiahCorradoDepartment of Electrical and Computer Engineering, Colorado State University, USA0000-0003-2688-0600JakeJ.HarmonDepartment of Electrical and Computer Engineering, Colorado State University, USAMilanM.IlicDepartment of Electrical and Computer Engineering, Colorado State University, USA, School of Electrical Engineering, University of Belgrade, SerbiaBranislavM.NotarošDepartment of Electrical and Computer Engineering, Colorado State University, USA10.21105/joss.04172https://doi.org/10.5281/zenodo.7849878Rusthttps://joss.theoj.org/papers/10.21105/joss.04172.pdfFEM, CEM, hp-refinement, PDE Solverstag:joss.theoj.org,2005:Paper/33802022-07-31T17:21:25Z2022-08-01T07:47:26ZArcheofrag: an R package for Refitting and Spatial Analysis in Archaeologyacceptedv0.7.12022-02-17 11:10:12 UTC752022-07-31 17:21:25 UTC720224335SébastienPlutniakUniversité Toulouse Jean Jaurès, TRACES Laboratory, Toulouse, France0000-0002-6674-380610.21105/joss.04335https://doi.org/10.5281/zenodo.6912425Rhttps://joss.theoj.org/papers/10.21105/joss.04335.pdfarchaeology, archeology, refitting, refits, stratigraphy, stratigraphic analysis, spatial analysis, site formationtag:joss.theoj.org,2005:Paper/29132021-12-28T15:52:08Z2021-12-29T00:00:41ZORION2: A magnetohydrodynamics code for star formationacceptedv1.0.02021-07-30 21:07:38 UTC682021-12-28 15:52:08 UTC620213771PakShingLiUC BerkeleyAndrewJ.CunninghamLawrence Livermore National LaboratoryBrandtL.GachesUniversity of CologneRichardI.KleinUC Berkeley, Lawrence Livermore National LaboratoryMarkR.KrumholzAustralian National UniversityAaronT.LeeSaint Mary's College of California0000-0002-8428-8050ChristopherF.McKeeUC BerkeleyStellaS. r.OffnerThe University of Texas at Austin0000-0003-1252-9916AnnaL.RosenCenter for Astrophysics | Harvard & SmithsonianAaronSkinnerLawrence Livermore National Laboratory10.21105/joss.03771https://doi.org/10.5281/zenodo.5791188C++, Gnuplot, Fortranhttps://joss.theoj.org/papers/10.21105/joss.03771.pdfastronomy, star formation, molecular clouds, magnetohydrodynamics, adaptive mesh refinementtag:joss.theoj.org,2005:Paper/28322021-10-16T07:57:48Z2021-10-18T09:18:04ZReel1.0 - A visualization tool for evaluating powder diffraction refinementsacceptedv.1.1.12021-07-01 15:01:07 UTC662021-10-16 07:57:48 UTC620213546FrederikH.GjørupDepartment of Chemistry and Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark0000-0003-3902-0247MathiasMørchDepartment of Chemistry and Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark0000-0002-8022-5538MogensChristensenDepartment of Chemistry and Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark0000-0001-6805-123210.21105/joss.03546https://doi.org/10.6084/m9.figshare.16817929Pythonhttps://joss.theoj.org/papers/10.21105/joss.03546.pdfdiffraction, TOPAS, Rietveld, pxrdtag:joss.theoj.org,2005:Paper/16262020-08-21T10:35:53Z2021-02-15T11:30:44ZTEfits: Nonlinear regression for time-evolving indicesacceptedv0.77.012020-05-21 02:57:48 UTC522020-08-21 10:35:53 UTC520202535AaronCochraneUniversity of Wisconsin - Madison0000-0001-6691-914910.21105/joss.02535https://doi.org/10.5281/zenodo.3992314Rhttps://joss.theoj.org/papers/10.21105/joss.02535.pdfPsychology, Nonlinear regression, Generalized nonlinear model, Perceptul learningtag:joss.theoj.org,2005:Paper/11462019-10-03T14:23:53Z2021-02-15T11:31:49ZENZO: An Adaptive Mesh Refinement Code for Astrophysics (Version 2.6)acceptedv2.62019-08-02 14:07:54 UTC422019-10-03 14:23:53 UTC420191636CoreyBrummel-SmithCenter for Relativistic Astrophysics, School of Physics, Georgia Institute of Technology0000-0001-6204-5181GregBryanDept. of Astronomy, Columbia University, Center for Computational Astrophysics, Flatiron Institute0000-0003-2630-9228IrynaButskyDept. of Astronomy, University of Washington in Seattle0000-0003-1257-5007LaurenCorliesDept. of Physics and Astronomy, Johns Hopkins University, Large Synoptic Survey Telescope0000-0002-0646-1540AndrewEmerickDept. of Astronomy, Columbia University, American Museum of Natural History0000-0003-2807-328XJohnForbesCenter for Astrophysics, Harvard & Smithsonian0000-0002-1975-4449YusukeFujimotoRSAA, Australian National UniversityNathanJ.GoldbaumSchool of Information Sciences, University of Illinois, Urbana-Champaign0000-0001-5557-267XPhilippGreteDept. of Physics and Astronomy, Michigan State University0000-0003-3555-9886CameronB.HummelsCalifornia Institute of Technology0000-0002-3817-8133Ji-hoonKimSeoul National University, Korea0000-0003-4464-1160DaegeneKohKavli Institute for Particle Astrophysics and Cosmology, Stanford University, Department of Physics, Stanford University, Stanford0000-0002-3546-5786MiaoLiCenter for Computational Astrophysics, Flatiron Institute0000-0003-0773-582XYuanLiTheoretical Astrophysics Center, University of California Berkeley0000-0001-5262-6150XinyuLiDept. of Astronomy, Columbia University0000-0003-0750-3543BrianOSheaDept. of Physics and Astronomy, Michigan State University, Department of Computational Mathematics, Science, and Engineering, Michigan State University0000-0002-2786-0348MollyS.PeeplesDept. of Physics and Astronomy, Johns Hopkins University, Space Telescope Science Institute0000-0003-1455-8788JohnA.ReganCenter for Astrophysics and Relativity, Dublin City University0000-0001-9072-6427MunierSalemDept. of Astronomy, Columbia University0000-0002-0197-526XWolframSchmidtHamburg Observatory, University of Hamburg0000-0001-5233-8087ChristineM.SimpsonEnrico Fermi Institute, The University of Chicago, Department of Astronomy & Astrophysics, The University of Chicago0000-0001-9985-1814BrittonD.SmithRoyal Observatory, University of Edinburgh0000-0002-6804-630XJasonTumlinsonDept. of Physics and Astronomy, Johns Hopkins University, Space Telescope Science Institute0000-0002-7982-412XMatthewJ.TurkSchool of Information Sciences, University of Illinois, Urbana-Champaign0000-0002-5294-0198JohnH.WiseCenter for Relativistic Astrophysics, School of Physics, Georgia Institute of Technology0000-0003-1173-8847TomAbelKavli Institute for Particle Astrophysics and Cosmology, Stanford University, Department of Physics, Stanford University, Stanford0000-0002-5969-1251JamesBordnerCenter for Astrophysics and Space Sciences, University of California, San Diego0000-0002-2625-5787RenyueCenDepartment of Astrophysical Sciences, Princeton University0000-0001-8531-9536DavidC.CollinsDept. of Physics, Florida State University0000-0001-6661-2243BrianCrosbyDept. of Physics and Astronomy, Michigan State University0000-0003-0179-874XPhilippEdelmannMax-Planck-Institut for Astrophysik0000-0001-7019-9578OliverHahnObservatoire de la C'ote d'Azur0000-0001-9440-1152RobertHarknessCenter for Astrophysics and Space Sciences, University of California, San DiegoElizabethHarper-ClarkCanadian Institute for Theoretical AstrophysicsShuoKongNo current affiliationAlexeiG.KritsukCenter for Astrophysics and Space Sciences, University of California, San Diego0000-0002-6554-1161MichaelKuhlenTheoretical Astrophysics Center, University of California BerkeleyJamesLarrueNo current affiliationEveLeeNo current affiliation0000-0002-1228-9820GregMeeceDept. of Physics and Astronomy, Michigan State UniversityMichaelL.NormanCenter for Astrophysics and Space Sciences, University of California, San Diego, SDSC, University of California, San Diego0000-0002-6622-8513JeffreyS.OishiPhysics and Astronomy, Bates College0000-0001-8531-6570PascalPaschosCenter for Astrophysics and Space Sciences, University of California, San DiegoCarolynPerutaDept. of Physics and Astronomy, Michigan State UniversityAlexRazoumovDept. of Astronomy & Physics, Saint Mary’s University, Halifax0000-0003-4392-6826DanielR.ReynoldsDepartment of Mathematics, Southern Methodist University0000-0002-0911-7841DevinSilviaDepartment of Computational Mathematics, Science, and Engineering, Michigan State University0000-0002-4109-9313SamuelW.SkillmanDescartes Labs0000-0002-7626-522XStephenSkoryOnSpot DataGeoffreyC.SoCenter for Astrophysics and Space Sciences, University of California, San DiegoElizabethTaskerInstitute of Space and Astronautical Science, Japan Aerospace Exploration Agency0000-0001-6692-612XRickWagnerCenter for Astrophysics and Space Sciences, University of California, San Diego0000-0003-1291-5876PengWangKavli Institute for Particle Astrophysics and Cosmology, Stanford UniversityHaoXuCenter for Astrophysics and Space Sciences, University of California, San DiegoFenZhaoKavli Institute for Particle Astrophysics and Cosmology, Stanford University10.21105/joss.01636https://doi.org/10.5281/zenodo.3469922C++, C, Fortranhttps://joss.theoj.org/papers/10.21105/joss.01636.pdfadaptive mesh refinement, astrophysics, galaxy formationtag:joss.theoj.org,2005:Paper/7672019-08-15T02:59:27Z2021-02-15T11:32:42ZNodeLab: A MATLAB package for meshfree node-generation and adaptive refinementacceptedv1.02019-01-02 07:44:06 UTC402019-08-15 02:59:27 UTC420191173PankajK.MishraDepartment of Mathematics, Hong Kong Baptist University, Kowloon Tong, Hong Kong0000-0003-4907-472410.21105/joss.01173https://doi.org/10.5281/zenodo.3361734Matlab, C++https://joss.theoj.org/papers/10.21105/joss.01173.pdfMATLAB, RBF, Scientific Computing, Numerical Modeling, Meshfree Methods, Meshless Methodstag:joss.theoj.org,2005:Paper/9382019-05-12T16:57:08Z2021-02-15T11:32:22ZAMReX: a framework for block-structured adaptive mesh refinementacceptedcurrent master branch on github2019-03-23 00:03:22 UTC372019-05-12 16:57:08 UTC420191370WeiqunZhangCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0001-8092-1974AnnAlmgrenCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0003-2103-312XVinceBecknerCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USAJohnBellCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0002-5749-334XJohannesBlaschkeCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0002-6024-3990CyChanComputational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0001-6881-827XMarcusDayCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0002-1711-3963BrianFriesenNational Energy Research Scientific Computing Center (NERSC), Berkeley, CA, USA0000-0002-1572-1631KevinGottNational Energy Research Scientific Computing Center (NERSC), Berkeley, CA, USA0000-0003-3244-5525DanielGravesComputational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0001-9730-7217MaxP.KatzNVIDIA Corporation, Santa Clara, CA, USA0000-0003-0439-4556AndrewMyersCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0001-8427-8330TanNguyenComputational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0003-3748-403XAndrewNonakaCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0003-1791-0265MicheleRossoCenter for Computational Sciences and Engineering (CCSE), Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0001-8126-7425SamuelWilliamsComputational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0002-8327-5717MichaelZingaleDepartment of Physics and Astronomy, Stony Brook University, Stony Brook, NY, USA0000-0001-8401-030X10.21105/joss.01370https://doi.org/10.5281/zenodo.2754709C++, Fortran, Chttps://joss.theoj.org/papers/10.21105/joss.01370.pdfadaptive mesh refinement, block-structured, finite volume, partial differential equations