published Published 12 months ago
jax-smfsb: A Python library for stochastic systems biology modelling and inference
Python
published Published about 1 year ago
RNMC: kinetic Monte Carlo implementations for complex reaction networks
C++ C Nix
published Published about 1 year ago
DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology
C++ GLSL
published Published over 1 year ago
primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other
Python
published Published over 1 year ago
STReNGTHS, a Python package to model and simulate complex reaction-diffusion systems
Python C++
published Published about 2 years ago
PeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cycling
C++ Roff
published Published over 2 years ago
SMART: Spatial Modeling Algorithms for Reactions and Transport
Python
published Published almost 3 years ago
ThermoFun: A C++/Python library for computing standard thermodynamic properties of substances and reactions across wide ranges of temperatures and pressures
C++ C QMake
published Published about 5 years ago
CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code
Python Gnuplot C Fortran
published Published over 5 years ago

