tag:joss.theoj.org,2005:/papers/tagged/r%20programmingJournal of Open Source Software2023-10-03T17:53:40ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/45522023-10-03T17:53:40Z2023-10-04T00:00:38ZPurpleCaffeine: tracking of quantum programs and experimentsacceptedv0.2.02023-06-19 22:22:46 UTC902023-10-03 17:53:40 UTC820235673IskandarSitdikovIBM Quantum, T.J. Watson Research Center, Yorktown Heights, NY 10598, USA0000-0002-6809-8943MichaëlRollinShape-IT, France0000-0001-8619-8190AnsahMohammadKuriyodathSardar Vallabhbhai National Institute of Technology, Surat, India0009-0005-5517-5363LuisEduardo MartínezHérnandezNetcracker, Mexico0000-0003-0354-509210.21105/joss.05673https://doi.org/10.5281/zenodo.8357519Pythonhttps://joss.theoj.org/papers/10.21105/joss.05673.pdfquantum computing, qiskit, experiment trackingtag:joss.theoj.org,2005:Paper/45892023-08-18T19:47:48Z2023-08-19T08:54:38ZA Java Library for Itemset Mining with Choco-solveracceptedv1.0.22023-07-09 13:14:01 UTC882023-08-18 19:47:48 UTC820235654CharlesVernereyTASC, IMT-Atlantique, LS2N-CNRS, Nantes, France0000-0002-2922-2833SamirLoudniTASC, IMT-Atlantique, LS2N-CNRS, Nantes, France0000-0001-6245-766110.21105/joss.05654https://doi.org/10.5281/zenodo.8263971Javahttps://joss.theoj.org/papers/10.21105/joss.05654.pdfConstraint Programming, Itemset Mining, Multi-Objective Optimisationtag:joss.theoj.org,2005:Paper/43952023-07-06T12:21:33Z2023-07-07T00:01:19ZEDP: a program for projecting electron densities from VASP onto planesacceptedv2.0.02023-04-12 12:37:00 UTC872023-07-06 12:21:33 UTC820235417I.a.w.FilotInorganic Materials and Catalysis, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology0000-0003-1403-837910.21105/joss.05417https://doi.org/10.5281/zenodo.8104498Python, C++https://joss.theoj.org/papers/10.21105/joss.05417.pdfElectron density, Charge density, VASP, Projectiontag:joss.theoj.org,2005:Paper/43142023-06-21T01:25:57Z2023-06-24T19:34:40ZPyVBMC: Efficient Bayesian inference in Pythonacceptedv1.0.02023-03-16 14:20:45 UTC862023-06-21 01:25:57 UTC820235428BobbyHugginsUniversity of Helsinki0009-0006-3475-5964ChengkunLiUniversity of Helsinki0000-0001-5848-910XMarlonTobabenUniversity of Helsinki0000-0002-9778-0853MikkoJ.AarnosUniversity of HelsinkiLuigiAcerbiUniversity of Helsinki0000-0001-7471-733610.21105/joss.05428https://doi.org/10.5281/zenodo.7966315Pythonhttps://joss.theoj.org/papers/10.21105/joss.05428.pdfBayesian statistics, Bayesian inference, Probabilistic programming, Model evidence, Machine learning, Simulator-based inferencetag:joss.theoj.org,2005:Paper/40812023-05-17T20:57:41Z2023-05-18T07:50:05ZAtomic Simulation Interface (ASI): application programming interface for electronic structure codesacceptedv1.02022-12-12 16:56:15 UTC852023-05-17 20:57:41 UTC820235186PavelV.StishenkoCardiff Catalysis Institute, School of Chemistry, Cardiff University, Cardiff, United Kingdom0000-0003-4653-9899ThomasW.KealScientific Computing Department, STFC Daresbury Laboratory, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom0000-0001-8747-3975ScottM.WoodleyDepartment of Chemistry, Kathleen Lonsdale Materials Chemistry, University College London, London, United Kingdom0000-0003-3418-9043VolkerBlumThomas Lord Department of Mechanical Engineering and Materials Science, Duke University, Durham, North Carolina 27708, United States0000-0001-8660-7230BenjaminHourahineSUPA, Department of Physics, University of Strathclyde, John Anderson Building, 107 Rottenrow, Glasgow G4 0NG, United Kingdom0000-0002-7667-7101ReinhardJ.MaurerDepartment of Chemistry, University of Warwick, Coventry, CV4 7AL, United Kingdom, Department of Physics, University of Warwick, Coventry, CV4 7AL, United Kingdom0000-0002-3004-785XAndrewJ.LogsdailCardiff Catalysis Institute, School of Chemistry, Cardiff University, Cardiff, United Kingdom0000-0002-2277-415X10.21105/joss.05186https://doi.org/10.5281/zenodo.7931108Chttps://joss.theoj.org/papers/10.21105/joss.05186.pdfPython, DFTtag:joss.theoj.org,2005:Paper/40792023-04-25T13:29:12Z2023-04-26T00:02:37Zbyteparsing: a functional parser combinator for mixed ASCII/binary dataaccepted0.1.22022-12-08 14:18:16 UTC842023-04-25 13:29:12 UTC820235293JohanHiddingNetherlands eScience Center0000-0002-7550-1796PabloRodríguez-SánchezNetherlands eScience Center0000-0002-2855-940X10.21105/joss.05293https://doi.org/10.5281/zenodo.7839894Python, Jupyter Notebook, Dhallhttps://joss.theoj.org/papers/10.21105/joss.05293.pdfparsing, binary, ascii, functional-programmingtag:joss.theoj.org,2005:Paper/29362023-01-21T00:10:10Z2023-01-22T00:01:01ZPIVC: A C/C++ Program for Particle Image Velocimetry Vector Computationacceptedv1.0.02021-08-10 23:04:30 UTC812023-01-21 00:10:10 UTC820233736KadeemDennisDepartment of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario, Canada, N6A 3K7MichaelMarxenDepartment of Psychiatry and Neuroimaging Center, Technische Universität Dresden, Würzburger Straße 35, 01187 Dresden, Germany0000-0001-8870-0041KamranSiddiquiDepartment of Mechanical and Materials Engineering, University of Western Ontario, 1151 Richmond Street, London, Ontario, Canada, N6A 3K710.21105/joss.03736https://doi.org/10.5281/zenodo.7556040C++, Chttps://joss.theoj.org/papers/10.21105/joss.03736.pdffluid mechanics, particle image velocimetry, image analysis, C/C++tag:joss.theoj.org,2005:Paper/38502022-12-16T19:00:02Z2022-12-17T00:01:07ZPDENLPModels.jl: An NLPModel API for Optimization Problems with PDE-Constraintsacceptedv0.3.22022-08-31 15:04:48 UTC802022-12-16 19:00:02 UTC720224736TangiMigotGERAD and Department of Mathematics and Industrial Engineering, Polytechnique Montréal, QC, Canada.0000-0001-7729-2513DominiqueOrbanGERAD and Department of Mathematics and Industrial Engineering, Polytechnique Montréal, QC, Canada.0000-0002-8017-7687AbelSoaresSiqueiraNetherlands eScience Center, Amsterdam, NL0000-0003-4451-281X10.21105/joss.04736https://doi.org/10.5281/zenodo.7447623Juliahttps://joss.theoj.org/papers/10.21105/joss.04736.pdfnonlinear optimization, large-scale optimization, constrained optimization, nonlinear programming, PDE-constrained optimizationtag:joss.theoj.org,2005:Paper/39042022-12-13T13:54:18Z2023-01-02T11:00:01ZDearEIS - A GUI program for analyzing impedance spectraaccepted3.1.22022-09-19 08:37:43 UTC802022-12-13 13:54:18 UTC720224808VilleYrjänäÅbo Akademi University, Faculty of Science and Engineering, Johan Gadolin Process Chemistry Centre, Laboratory of Molecular Science and Engineering, Turku (Åbo), Finland0000-0001-5779-520110.21105/joss.04808https://doi.org/10.5281/zenodo.7371986Python, Inno Setuphttps://joss.theoj.org/papers/10.21105/joss.04808.pdfelectrochemistry, impedance spectroscopytag:joss.theoj.org,2005:Paper/33052022-10-16T18:11:19Z2022-10-17T00:01:29ZDeepSynth: Scaling Neural Program Synthesis with Distribution-based Searchacceptedv1.02022-01-25 09:55:56 UTC782022-10-16 18:11:19 UTC720224151ThéoMatriconCNRS, LaBRI and Université de Bordeaux, France0000-0002-5043-3221NathanaëlFijalkowCNRS, LaBRI and Université de Bordeaux, France, The Alan Turing Institute of data science, United Kingdom0000-0002-6576-4680GuillaumeLagardeCNRS, LaBRI and Université de Bordeaux, FranceKevinEllisCornell University, United States10.21105/joss.04151https://doi.org/10.5281/zenodo.7194579Python, Slashhttps://joss.theoj.org/papers/10.21105/joss.04151.pdfprogram synthesis, programming by example, neuro-symbolic methods, parallel search procedures