tag:joss.theoj.org,2005:/papers/tagged/qualJournal of Open Source Software2023-10-23T10:25:02ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42822023-10-23T10:25:02Z2023-10-24T00:01:06ZQuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Dataaccepted1.32023-03-06 22:06:16 UTC902023-10-23 10:25:02 UTC820235313ManavalanGajapathyCenter for Computational Genomics and Data Science, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-8606-0113BrandonM.WilkCenter for Computational Genomics and Data Science, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-4110-2324ElizabethA.WortheyCenter for Computational Genomics and Data Science, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0003-4083-776410.21105/joss.05313https://doi.org/10.5281/zenodo.10002036Jinja, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05313.pdfsnakemake, quality control, genome sequencing, exome sequencing, QC review, multiqc, singularity, bam, vcftag:joss.theoj.org,2005:Paper/28882021-12-10T17:52:19Z2021-12-19T12:03:28ZTaguette: open-source qualitative data analysisaccepted1.0.02021-07-17 19:18:55 UTC682021-12-10 17:52:19 UTC620213522RémiRampinIndependent Researcher0000-0002-0524-2282VickyRampinIndependent Researcher0000-0003-4298-168X10.21105/joss.03522https://doi.org/10.5281/zenodo.5574555Python, Makohttps://joss.theoj.org/papers/10.21105/joss.03522.pdfqualitative, qualitative data analysis, qual, document, text, tagging, tags, coding, highlights, notes, text-analysis, highlighting, caqdas, python, SQLitetag:joss.theoj.org,2005:Paper/30802021-11-17T07:05:47Z2021-11-18T00:02:25ZEDO.js: A comprehensive JavaScript library for interaction with musical set theory in any tuningacceptedv1.2.132021-09-23 17:22:17 UTC672021-11-17 07:05:47 UTC620213784MichaelSeltenreichDepartment of Music, New York University, New York, New York 100030000-0002-6061-067410.21105/joss.03784https://doi.org/10.5281/zenodo.5705161JavaScripthttps://joss.theoj.org/papers/10.21105/joss.03784.pdfmusic theory, music analysis, music perception, set theory, diatonic set theory, equal divisions of the octave, TETtag:joss.theoj.org,2005:Paper/23872021-03-31T15:42:57Z2021-04-02T12:27:09ZMetatheory.jl: Fast and Elegant Algebraic Computation in Julia with Extensible Equality Saturationacceptedv0.1.02021-02-12 14:39:29 UTC592021-03-31 15:42:57 UTC620213078AlessandroCheliUniversity of Pisa, Pisa, Italy0000-0002-8122-946910.21105/joss.03078https://doi.org/10.5281/zenodo.4646136Juliahttps://joss.theoj.org/papers/10.21105/joss.03078.pdfcompiler, symbolic, algebra, rewriting, optimizationtag:joss.theoj.org,2005:Paper/9962019-11-05T12:30:36Z2021-02-15T11:32:11Zcppduals: a nestable vectorized templated dual number library for C++11acceptedv0.1.02019-05-13 13:56:27 UTC432019-11-05 12:30:36 UTC420191487MichaelTeschDepartment of Chemistry, Technische Universität München, 85747 Garching, Germany0000-0003-4096-156210.21105/joss.01487https://doi.org/10.5281/zenodo.3528307C++https://joss.theoj.org/papers/10.21105/joss.01487.pdfdual numbers, autodiff, differentiation, vectorization, Eigentag:joss.theoj.org,2005:Paper/9072019-03-27T15:07:57Z2021-02-15T11:32:28Zhealpy: equal area pixelization and spherical harmonics transforms for data on the sphere in Pythonaccepted1.12.82019-02-28 18:38:22 UTC352019-03-27 15:07:57 UTC420191298AndreaZoncaSan Diego Supercomputer Center, University of California, San Diego, USA0000-0001-6841-1058LeoP.SingerGoddard Space Flight Center, NASA, Greenbelt, Maryland, USADanielLenzJet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA0000-0001-5820-475XMartinReineckeMax-Planck-Institute for Astrophysics, Garching, GermanyCyrilleRossetLaboratoire Astroparticules et Cosmologie, CNRS/Université Paris Diderot, Paris, France0000-0003-0286-2192EricHivonInstitut d'Astrophysique de Paris, CNRS/Sorbonne Universite, Paris, France0000-0003-1880-2733KrzysztofM.GorskiJet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA10.21105/joss.01298https://doi.org/10.5281/zenodo.2605426Python, C++, Chttps://joss.theoj.org/papers/10.21105/joss.01298.pdfcosmology, astronomy, pythontag:joss.theoj.org,2005:Paper/1432017-02-03T00:00:00Z2021-02-15T11:34:17ZRiskPortfolios: Computation of Risk-Based Portfolios in Raccepted2.00.112017-01-10 22:43:30 UTC102017-02-03 00:00:00 UTC22017171DavidArdiaInstitute of Financial Analysis - University of Neuchâtel0000-0003-2823-782XKrisBoudtSolvay Business School - Vrije Universiteit BrusselJean-PhilippeGagnon-FleuryPSP Investments10.21105/joss.00171https://doi.org/10.5281/zenodo.267972Rhttps://joss.theoj.org/papers/10.21105/joss.00171.pdfrisk, portfolio, optimization, mean-variance, minimum variance, inverse-volatility, equal-risk-contribution, maximum diversification, risk-efficient