tag:joss.theoj.org,2005:/papers/tagged/python3Journal of Open Source Software2024-03-25T09:10:44ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48492024-03-25T09:10:44Z2024-03-26T00:00:59ZAcanthophis: a comprehensive plant hologenomics pipelineacceptedv1.0.02023-10-15 07:16:35 UTC952024-03-25 09:10:44 UTC920246062KevinD.MurrayMax Planck Institute for Biology Tübingen, 72076 Tübingen, Germany0000-0002-2466-1917JustinO.BorevitzResearch School of Biology, Australian National University, Canberra, Australia0000-0001-8408-3699DetlefWeigelMax Planck Institute for Biology Tübingen, 72076 Tübingen, Germany0000-0002-2114-7963NormanWarthmannResearch School of Biology, Australian National University, Canberra, Australia, FAO/IAEA Joint Centre of Nuclear Techniques in Food and Agriculture, Plant Breeding and Genetics Laboratory, Seibersdorf, Austria0000-0002-1178-840910.21105/joss.06062https://doi.org/10.5281/zenodo.10795245Pythonhttps://joss.theoj.org/papers/10.21105/joss.06062.pdfpython, snakemake, plants, metagenomics, variant calling, population genomics, reference-free classificationtag:joss.theoj.org,2005:Paper/41602024-02-29T19:05:35Z2024-03-01T08:13:27ZDAPPER: Data Assimilation with Python: a Package for Experimental Researchacceptedv1.4.02023-01-10 18:54:31 UTC942024-02-29 19:05:35 UTC920245150PatrickN.RaanesNORCE, Bergen, Norway, NERSC, Bergen, Norway0000-0001-5073-6786YumengChenDepartment of Meteorology and NCEO, University of Reading, Reading, UK0000-0002-2319-6937ColinGrudzienCW3E - Scripps Institution of Oceanography, University of California, San Diego, USA, Department of Mathematics and Statistics, University of Nevada, Reno, USA0000-0002-3084-317810.21105/joss.05150https://doi.org/10.5281/zenodo.10710355Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.05150.pdfdata-assimilation, state-estimation, bayesian-filter, kalman-filtering, enkf, particle-filter, chaos, bayesian-methodstag:joss.theoj.org,2005:Paper/42702024-02-22T16:46:16Z2024-02-23T00:01:10ZAkantu: an HPC finite-element library for contact and dynamic fracture simulationsacceptedv4.0.12023-02-28 19:10:56 UTC942024-02-22 16:46:16 UTC920245253NicolasRichartCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1463-4405GuillaumeAnciauxCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-9624-5621EmilGallyamovCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-2970-0890LucasFrérotCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Department of Microsystems Engineering, University of Freiburg, Germany, Institut Jean le Rond d'Alembert, CNRS UMR 7190, Sorbonne Université, France0000-0002-4138-1052DavidKammerCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Institute for Building Materials, ETH Zurich, Switzerland0000-0003-3782-9368MohitPundirCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Institute for Building Materials, ETH Zurich, Switzerland0000-0001-7244-7416MarcoVocialtaCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, SwitzerlandAureliaCubaRamosCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, SwitzerlandMauroCorradoCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Department of Structural, Geotechnical and Building Engineering, Politecnico di Torino, ItalyPhilipMüllerInstitute for Building Materials, ETH Zurich, SwitzerlandFabianBarrasCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, The Njord Centre Department of Physics, Department of Geosciences, University of Oslo, Norway0000-0003-1109-0200ShenghanZhangCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, The Hong Kong University of Science and Technology, Department of Civil and Environmental Engineering0000-0002-4327-9115RoxaneFerryCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0003-1881-6596ShadDurusselCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0009-0001-6036-168XJean-FrançoisMolinariCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1728-184410.21105/joss.05253https://doi.org/10.5281/zenodo.10668768C, C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05253.pdfcohesive element, contact, fracture, pythontag:joss.theoj.org,2005:Paper/48382024-01-22T15:00:12Z2024-01-23T11:55:19Zcstag and cstag-cli: tools for manipulating and visualizing cs tagsacceptedv1.0.42023-10-06 03:25:34 UTC932024-01-22 15:00:12 UTC920246066AkihiroKunoDepartment of Anatomy and Embryology, University of Tsukuba, Tsukuba, Ibaraki, Japan, Laboratory Animal Resource Center, Trans-border Medical Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan.0000-0002-4674-688210.21105/joss.06066https://doi.org/10.5281/zenodo.10544838Pythonhttps://joss.theoj.org/papers/10.21105/joss.06066.pdfpython, genomics, sequencing, bioinformaticstag:joss.theoj.org,2005:Paper/48252024-01-19T21:37:47Z2024-01-20T00:00:44Zpymatgen-analysis-defects: A Python package for analyzing point defects in crystalline materialsacceptedv2023.08.222023-10-02 01:54:09 UTC932024-01-19 21:37:47 UTC920245941Jimmy-XuanShenLawrence Livermore National Laboratory, Livermore, California 94550, United States0000-0002-2743-7531JoelVarleyLawrence Livermore National Laboratory, Livermore, California 94550, United States0000-0002-5384-524810.21105/joss.05941https://doi.org/10.5281/zenodo.6994437Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05941.pdfpython, materials science, point defects, finite-size corrections, database buildingtag:joss.theoj.org,2005:Paper/45432024-01-16T16:18:16Z2024-01-17T00:00:43ZSPICY: a Python toolbox for meshless assimilation from image velocimetry using radial basis functionsacceptedv1.0.02023-06-13 17:15:19 UTC932024-01-16 16:18:16 UTC920245749PietroSperottoThe von Karman Institute for Fluid Dynamics (VKI), Rhode St. Genese, 1640, Belgium0000-0001-9412-0828M.RatzThe von Karman Institute for Fluid Dynamics (VKI), Rhode St. Genese, 1640, Belgium0009-0008-8491-8367M.A.MendezThe von Karman Institute for Fluid Dynamics (VKI), Rhode St. Genese, 1640, Belgium0000-0002-1115-218710.21105/joss.05749https://doi.org/10.5281/zenodo.10473329JavaScript, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05749.pdfPython, Radial Basis Functions, Super resolution in Image Velocimetry, Data Assimilation in Image Velocimetry, Poisson Equationtag:joss.theoj.org,2005:Paper/44722023-12-20T13:52:34Z2023-12-21T00:00:54Zotoole: OSeMOSYS Tools for Energy Workacceptedv1.0.32023-05-03 23:46:36 UTC922023-12-20 13:52:34 UTC820235511TrevorBarnesSchool of Sustainable Energy Engineering, Simon Fraser University, Vancouver, Canada0000-0003-2458-2968WillUsherEnergy Technology, KTH Royal Institute of Technology, Stockholm, Sweden0000-0001-9367-179110.21105/joss.05511https://doi.org/10.5281/zenodo.10360538Pythonhttps://joss.theoj.org/papers/10.21105/joss.05511.pdfpython, energy, energy systems, energy systems modelling, osemosystag:joss.theoj.org,2005:Paper/45692023-12-02T08:01:07Z2023-12-04T09:27:34ZPyBCI: A Python Package for Brain-Computer Interface (BCI) Designaccepted1.0.02023-06-27 14:31:44 UTC922023-12-02 08:01:07 UTC820235706LiamBoothFaculty of Science and Engineering, University of Hull, United Kingdom.0000-0002-8749-9726AzizAsgharCentre for Anatomical and Human Sciences, Hull York Medical School, University of Hull, United Kingdom.0000-0002-3735-4449AnthonyBatesonFaculty of Science and Engineering, University of Hull, United Kingdom.0000-0002-4780-445810.21105/joss.05706https://doi.org/10.5281/zenodo.10245437Python, C++https://joss.theoj.org/papers/10.21105/joss.05706.pdfbrain-computer-interface, python, bci, lsl, labstreaminglayer, machinelearningtag:joss.theoj.org,2005:Paper/47602023-11-21T15:05:15Z2023-11-22T00:00:59ZBoboCEP: a Fault-Tolerant Complex Event Processing Engine for Edge Computing in Internet of Thingsaccepted1.1.02023-09-16 20:33:14 UTC912023-11-21 15:05:15 UTC820235858AlexanderPowerDepartment of Computer Science, University of Bath, United Kingdom0000-0001-5348-706810.21105/joss.05858https://doi.org/10.5281/zenodo.10160409Pythonhttps://joss.theoj.org/papers/10.21105/joss.05858.pdfcomplex event processing, edge computing, internet of things, pythontag:joss.theoj.org,2005:Paper/44412023-11-21T14:31:42Z2023-11-22T00:01:07ZOpenTera: A Framework for Telehealth Applicationsacceptedv1.2.12023-04-19 14:03:04 UTC912023-11-21 14:31:42 UTC820235497DominicLétourneauInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, Canada0000-0001-7825-7533SimonBrièreResearch Center on Aging (CDRV), Université de Sherbrooke, Canada0009-0000-1224-8001Marc-AntoineMaheuxInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, Canada0000-0002-3983-8754CédricGodinInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, CanadaPhilippeWarrenInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, Canada0009-0008-4466-0963GabrielLauzierInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, CanadaIan-MathieuJolyInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, CanadaJérémieBourqueInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, Canada0009-0008-5868-9724PhilippeArsenaultInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, Canada0009-0003-0772-1177CynthiaVilanovaResearch Center on Aging (CDRV), Université de Sherbrooke, CanadaMichelTousignantResearch Center on Aging (CDRV), Université de Sherbrooke, Canada0000-0001-7561-1170FrançoisMichaudInterdisciplinary Institute for Technological Innovation (3IT), Université de Sherbrooke, Canada0000-0002-3639-777010.21105/joss.05497https://doi.org/10.5281/zenodo.10078847https://joss.theoj.org/papers/10.21105/joss.05497.pdfPython, Microservices, Tele-Health, Rehabilitation, Robotics, Telepresence