tag:joss.theoj.org,2005:/papers/tagged/pythonJournal of Open Source Software2024-03-27T17:32:28ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/45642024-03-27T17:32:28Z2024-03-28T00:01:19ZRaphtory: The temporal graph engine for Rust and Pythonacceptedv0.4.22023-06-26 16:02:18 UTC952024-03-27 17:32:28 UTC920245940BenSteerPometry, United Kingdom, School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom0000-0001-9446-5690NaomiA.ArnoldNetworks Science Institute, Northeastern University London, United Kingdom0000-0001-6396-4788CheickTidianeUniversity of Milan, Italy, School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom0000-0002-4035-7464RenaudLambiotteMathematical Institute, University of Oxford, United Kingdom, Pometry, United Kingdom, Alan Turing Institute, United Kingdom0000-0002-0583-4595HaaroonYousafPometry, United Kingdom0000-0001-5098-5811LucasJeubPometry, United Kingdom0000-0001-8941-9227FabianMurariu32 Bytes Software, United KingdomShivamKapoorPometry, United KingdomPedroRicoPometry, United Kingdom0000-0002-4698-8435RachelChanPometry, United KingdomLouisChanPometry, United KingdomJamesAlfordPometry, United KingdomRichardG.CleggSchool of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom0000-0001-7241-6679FelixCuadradoUniversidad Politécnica de Madrid, Spain, School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom0000-0002-5745-1609MatthewRussellBarnesSchool of Electronic Engineering and Computer Science, Queen Mary University of London, United KingdomPeijieZhongSchool of Electronic Engineering and Computer Science, Queen Mary University of London, United KingdomJohnPougué-BiyongMathematical Institute, University of Oxford, United Kingdom0000-0002-6582-193XAlhamzaAlnaimiPometry, United Kingdom10.21105/joss.05940https://doi.org/10.5281/zenodo.10530613Python, Rusthttps://joss.theoj.org/papers/10.21105/joss.05940.pdftemporal networks, graphs, dynamicstag:joss.theoj.org,2005:Paper/49762024-03-26T05:48:55Z2024-03-27T00:01:16ZHofstadterTools: A Python package for analyzing the Hofstadter modelacceptedv1.0.02023-12-02 03:40:46 UTC952024-03-26 05:48:55 UTC920246356BartholomewAndrewsDepartment of Physics, University of California, Berkeley, USA0000-0002-9079-743310.21105/joss.06356https://doi.org/10.5281/zenodo.10809833Pythonhttps://joss.theoj.org/papers/10.21105/joss.06356.pdftheoretical physics, electromagnetism, fractals, quantum physics, topological materials, mathematical physics, topological order, condensed matter physics, quantum Hall effect, band theorytag:joss.theoj.org,2005:Paper/49422024-03-26T05:48:51Z2024-03-27T00:01:20Zbonsai_ipcc - a Python package for the calculation of national greenhouse gas inventoriesacceptedv0.2.02023-11-17 11:04:24 UTC952024-03-26 05:48:51 UTC920246123MaikBudzinskiDepartment of Sustainability and Planning, Aalborg University, Denmark.0000-0003-2879-1193JoaoF.d.Rodrigues2.-0 LCA consultants, Aalborg, Denmark.0000-0002-1437-0059MathieuDelpierre2.-0 LCA consultants, Aalborg, Denmark.10.21105/joss.06123https://doi.org/10.5281/zenodo.10822520Pythonhttps://joss.theoj.org/papers/10.21105/joss.06123.pdfgreenhouse gases, life cycle assessment, climate changetag:joss.theoj.org,2005:Paper/49282024-03-25T16:51:46Z2024-03-26T00:00:57ZpyEQL: A Python interface for water chemistryacceptedv0.9.22023-11-08 14:00:04 UTC952024-03-25 16:51:46 UTC920246295RyanKingsburyDepartment of Civil and Environmental Engineering and the Andlinger Center for Energy and the Environment, Princeton University, USA0000-0002-7168-396710.21105/joss.06295https://doi.org/10.5281/zenodo.8332915Pythonhttps://joss.theoj.org/papers/10.21105/joss.06295.pdfenvironmental engineering, water treatment, desalination, geochemistry, electrolytes, electrochemistrytag:joss.theoj.org,2005:Paper/48492024-03-25T09:10:44Z2024-03-26T00:00:59ZAcanthophis: a comprehensive plant hologenomics pipelineacceptedv1.0.02023-10-15 07:16:35 UTC952024-03-25 09:10:44 UTC920246062KevinD.MurrayMax Planck Institute for Biology Tübingen, 72076 Tübingen, Germany0000-0002-2466-1917JustinO.BorevitzResearch School of Biology, Australian National University, Canberra, Australia0000-0001-8408-3699DetlefWeigelMax Planck Institute for Biology Tübingen, 72076 Tübingen, Germany0000-0002-2114-7963NormanWarthmannResearch School of Biology, Australian National University, Canberra, Australia, FAO/IAEA Joint Centre of Nuclear Techniques in Food and Agriculture, Plant Breeding and Genetics Laboratory, Seibersdorf, Austria0000-0002-1178-840910.21105/joss.06062https://doi.org/10.5281/zenodo.10795245Pythonhttps://joss.theoj.org/papers/10.21105/joss.06062.pdfpython, snakemake, plants, metagenomics, variant calling, population genomics, reference-free classificationtag:joss.theoj.org,2005:Paper/45062024-03-21T10:22:23Z2024-03-24T17:58:38ZAutomatic Computation for Robot Design (ACRoD): A Python package for numerical calculation of Jacobian of a robot at a given configuration around a specified end-effector pointacceptedv1.1.42023-05-24 15:07:03 UTC952024-03-21 10:22:23 UTC920245927AkkarapakamSuneeshJacobIndian Institute of Technology Kanpur, Kanpur, India.0000-0002-9855-9368RituparnaDattaCapgemini Technological Services India Limited, Bengaluru, India.0000-0003-3816-243810.21105/joss.05927https://doi.org/10.5281/zenodo.10819242Pythonhttps://joss.theoj.org/papers/10.21105/joss.05927.pdfRobotics, Jacobian, Kinematicstag:joss.theoj.org,2005:Paper/48242024-03-18T12:36:12Z2024-03-19T00:01:19ZShapelets: A Python package implementing shapelet functions and their applicationsacceptedv0.12023-09-30 00:32:46 UTC952024-03-18 12:36:12 UTC920246058MatthewPeresTinoDepartment of Chemical Engineering, University of Waterloo, Ontario, Canada0009-0005-6832-1761AbbasYusufAbdulazizDepartment of Chemical Engineering, University of Waterloo, Ontario, CanadaRobertSudermanGoogle Inc.ThomasAkdenizEast Coast Asset Management SEZCNasserMohieddinAbukhdeirDepartment of Chemical Engineering, University of Waterloo, Ontario, Canada, Department of Physics and Astronomy, University of Waterloo, Ontario, Canada, Waterloo Institute for Nanotechnology, University of Waterloo, Ontario, Canada0000-0002-1772-037610.21105/joss.06058https://doi.org/10.5281/zenodo.10819578Pythonhttps://joss.theoj.org/papers/10.21105/joss.06058.pdfshapelets, self-assembly, astronomy, image processing, machine learningtag:joss.theoj.org,2005:Paper/50042024-03-17T15:00:35Z2024-03-18T07:46:38ZSelfEEG: A Python library for Self-Supervised Learning in Electroencephalographyacceptedv0.1.02023-12-16 00:30:46 UTC952024-03-17 15:00:35 UTC920246224FedericoDel PupDepartment of Information Engineering, University of Padova, Padova, Italy, Department of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy0009-0004-0698-962XAndreaZanolaPadova Neuroscience Center, University of Padova, Padova, Italy0000-0001-6973-8634Louis FabriceTshimangaDepartment of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy0009-0002-1240-4830Paolo EmilioMazzonPadova Neuroscience Center, University of Padova, Padova, ItalyManfredoAtzoriDepartment of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy, Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland0000-0001-5397-206310.21105/joss.06224https://doi.org/10.5281/zenodo.10813095Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.06224.pdfPyTorch, Deep Learning (DL), Self-Supervised Learning (SSL), Contrastive Learning (CL), Electroencephalography (EEG), Biomedical signalstag:joss.theoj.org,2005:Paper/50542024-03-13T19:36:59Z2024-03-14T09:10:13ZPyProximal - scalable convex optimization in Pythonacceptedv0.7.02023-12-31 11:55:29 UTC952024-03-13 19:36:59 UTC920246326MatteoRavasiEarth Science and Engineering, Physical Sciences and Engineering (PSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia0000-0003-0020-2721MarcusValtonenÖrnhagEricsson Research, Lund, Sweden.0000-0001-8687-227XNickLuikenEarth Science and Engineering, Physical Sciences and Engineering (PSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia0000-0003-3307-1748OlivierLeblancISPGroup, INMA/ICTEAM, UCLouvain, Louvain-la-Neuve, Belgium.0000-0003-3641-1875EnekoUruñuelaBasque Center on Cognition, Brain and Language (BCBL), Donostia-San Sebastián, Spain.0000-0001-6849-908810.21105/joss.06326https://doi.org/10.5281/zenodo.10805997Pythonhttps://joss.theoj.org/papers/10.21105/joss.06326.pdfconvex optimization, proximaltag:joss.theoj.org,2005:Paper/48522024-03-09T21:38:19Z2024-03-11T01:37:29ZHyperNetX: A Python package for modeling complex network data as hypergraphsacceptedv2.0.52023-10-16 19:38:03 UTC952024-03-09 21:38:19 UTC920246016BrendaPraggastisPacific Northwest National Laboratory, USA0000-0003-1344-0497SinanAksoyPacific Northwest National Laboratory, USA0000-0002-3466-3334DustinArendtPacific Northwest National Laboratory, USA0000-0003-2466-199XMarkBonicilloPacific Northwest National Laboratory, USA0009-0003-9764-2180CliffJoslynPacific Northwest National Laboratory, USA0000-0002-5923-5547EmiliePurvinePacific Northwest National Laboratory, USA0000-0003-2069-5594MadelynShapiroPacific Northwest National Laboratory, USA0000-0002-2786-7056JiYoungYunPacific Northwest National Laboratory, USA10.21105/joss.06016https://doi.org/10.5281/zenodo.10795225Pythonhttps://joss.theoj.org/papers/10.21105/joss.06016.pdfhypergraph, network science, simplicial-complexes, knowledge graph, simplicial-homology, s-linegraph, property hypergraph