JOSS Papers: proteins

Published Papers

published Published about 1 month ago

Af-analysis: a Python package for Alphafold analysis

Jupyter Notebook Python

10.21105/joss.07577

published Published 9 months ago

proteusPy: A Python Package for Protein Structure and Disulfide Bond Modeling and Analysis

Python Jupyter Notebook

10.21105/joss.06169

published Published 9 months ago

dms-viz: Structure-informed visualiz ations for deep mutational scanning and other mutation-based datasets

JavaScript

@WillHannon-MCB

10.21105/joss.06129

published Published about 1 year ago

DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning

Python Jupyter Notebook

10.21105/joss.05983

published Published over 1 year ago

Molearn: a Python package streamlining the design of generative models of biomolecular dynamics

Python

10.21105/joss.05523

published Published almost 2 years ago

msmhelper: A Python package for Markov state modeling of protein dynamics

Python

10.21105/joss.05339

published Published almost 2 years ago

SPyCi-PDB: A modular command-line interface for back-calculating experimental datatypes of protein structures.

Python

10.21105/joss.04861

published Published over 4 years ago

Parent-map: analysis of parental contributions to evolved or engineered protein or DNA sequences

Python

10.21105/joss.02864

published Published over 4 years ago

dms-view: Interactive visualization tool for deep mutational scanning data

Ruby JavaScript Python

10.21105/joss.02353

published Published almost 5 years ago

taurenmd: A command-line interface for analysis of Molecular Dynamics simulations.

Python

@joaomcteixeira

10.21105/joss.02175

Displaying papers 1 - 10 of 14 in total

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