tag:joss.theoj.org,2005:/papers/tagged/plantsJournal of Open Source Software2024-03-25T09:10:44ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48492024-03-25T09:10:44Z2024-03-26T00:00:59ZAcanthophis: a comprehensive plant hologenomics pipelineacceptedv1.0.02023-10-15 07:16:35 UTC952024-03-25 09:10:44 UTC920246062KevinD.MurrayMax Planck Institute for Biology Tübingen, 72076 Tübingen, Germany0000-0002-2466-1917JustinO.BorevitzResearch School of Biology, Australian National University, Canberra, Australia0000-0001-8408-3699DetlefWeigelMax Planck Institute for Biology Tübingen, 72076 Tübingen, Germany0000-0002-2114-7963NormanWarthmannResearch School of Biology, Australian National University, Canberra, Australia, FAO/IAEA Joint Centre of Nuclear Techniques in Food and Agriculture, Plant Breeding and Genetics Laboratory, Seibersdorf, Austria0000-0002-1178-840910.21105/joss.06062https://doi.org/10.5281/zenodo.10795245Pythonhttps://joss.theoj.org/papers/10.21105/joss.06062.pdfpython, snakemake, plants, metagenomics, variant calling, population genomics, reference-free classificationtag:joss.theoj.org,2005:Paper/45932023-11-30T16:13:26Z2023-12-01T00:00:56ZSphericalScattering: A Julia Package for Electromagnetic Scattering from Spherical Objectsacceptedv0.5.02023-07-11 15:39:18 UTC912023-11-30 16:13:26 UTC820235820BerndHofmannDepartment of Electrical Engineering, School of Computation, Information and Technology, Technical University of Munich, 80290 Munich, Germany0000-0003-1435-6203PaulaRespondekFakultät für Informatik und Elektrotechnik, Universität Rostock, 18059 Rostock, Germany0009-0005-4892-2711SimonB.AdrianFakultät für Informatik und Elektrotechnik, Universität Rostock, 18059 Rostock, Germany0000-0001-8008-623510.21105/joss.05820https://doi.org/10.5281/zenodo.10211642Juliahttps://joss.theoj.org/papers/10.21105/joss.05820.pdfdipole, electromagnetics, field theory, Mie scattering, plane wave, ring-current, sphere, spherical waves, time-harmonictag:joss.theoj.org,2005:Paper/43952023-07-06T12:21:33Z2023-07-07T00:01:19ZEDP: a program for projecting electron densities from VASP onto planesacceptedv2.0.02023-04-12 12:37:00 UTC872023-07-06 12:21:33 UTC820235417I.a.w.FilotInorganic Materials and Catalysis, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology0000-0003-1403-837910.21105/joss.05417https://doi.org/10.5281/zenodo.8104498Python, C++https://joss.theoj.org/papers/10.21105/joss.05417.pdfElectron density, Charge density, VASP, Projectiontag:joss.theoj.org,2005:Paper/42022023-06-26T12:47:48Z2023-06-27T00:01:06ZPlantSimEngine: A Simulation Engine For The Soil-Plant-Atmosphere Systemacceptedv0.5.02023-02-10 18:21:28 UTC862023-06-26 12:47:48 UTC820235371RémiVezyCIRAD, UMR AMAP, F-34398 Montpellier, France., AMAP, Univ Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France.0000-0002-0808-146110.21105/joss.05371https://doi.org/10.5281/zenodo.8037466Juliahttps://joss.theoj.org/papers/10.21105/joss.05371.pdfagronomy, crops, fspm, functional-structural plant modeling, plants, modellingtag:joss.theoj.org,2005:Paper/39032023-02-28T11:06:40Z2023-03-01T00:04:47ZWakeflow: A Python package for semi-analytic models of planetary wakesacceptedv1.2.02022-09-19 07:53:20 UTC822023-02-28 11:06:40 UTC820234863ThomasHilderSchool of Physics and Astronomy, Monash University, Australia0000-0001-7641-5235DanieleFasanoDipartimento di Fisica, Università degli Studi di Milano, Italy0000-0003-4679-4072FrancescoBollatiDipartimento di Scienza e Alta Tecnologia, Università degli Studi dell'Insubria, ItalyJacobVandenbergSchool of Mathematics, Monash University, Australia0000-0002-4055-972810.21105/joss.04863https://doi.org/10.5281/zenodo.7679415Pythonhttps://joss.theoj.org/papers/10.21105/joss.04863.pdfastronomy, dynamics, protoplanetary disks, planet formationtag:joss.theoj.org,2005:Paper/29062021-09-26T00:44:12Z2021-09-27T00:00:35Zcerf: A Python package to evaluate the feasibility and costs of power plant siting for alternative futuresacceptedv2.0.02021-07-27 15:48:17 UTC652021-09-26 00:44:12 UTC620213601ChrisR.VernonPacific Northwest National Laboratory, Richland, WA., USA0000-0002-3406-6214JennieS.RicePacific Northwest National Laboratory, Richland, WA., USA0000-0002-7833-9456NinoZuljevicPacific Northwest National Laboratory, Richland, WA., USA0000-0002-3175-9277KendallMongirdPacific Northwest National Laboratory, Richland, WA., USA0000-0003-2807-7088KristianNelsonPacific Northwest National Laboratory, Richland, WA., USA0000-0002-6745-167XGokulIyerJoint Global Change Research Institute, PNNL, College Park, MD., USA0000-0002-3565-7526NathalieVoisinPacific Northwest National Laboratory, Richland, WA., USA0000-0002-6848-449XMatthewBinstedJoint Global Change Research Institute, PNNL, College Park, MD., USA0000-0002-5177-725310.21105/joss.03601https://doi.org/10.5281/zenodo.5527334Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.03601.pdfpower plant siting, electricity capacity expansiontag:joss.theoj.org,2005:Paper/22302021-09-19T14:35:35Z2021-09-20T00:01:25ZCorrelation: An Analysis Tool for Liquids and for Amorphous Solidsacceptedv1.0.02020-12-10 19:12:39 UTC652021-09-19 14:35:35 UTC620212976IsaíasRodríguezDepartamento de Materia Condensada, Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Coyoacán, Ciudad de México, México.0000-0002-4359-2742RenelaM.ValladaresDepartamento de Física, Facultad de Ciencias, Universidad Nacional Autónoma de México, Coyoacán, Ciudad de México, México.0000-0002-3819-2226AlexanderValladaresDepartamento de Física, Facultad de Ciencias, Universidad Nacional Autónoma de México, Coyoacán, Ciudad de México, México.DavidHinojosa-RomeroDepartamento de Materia Condensada, Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Coyoacán, Ciudad de México, México.0000-0002-8686-965XUlisesSantiagoDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.0000-0003-2259-5984ArielA.ValladaresDepartamento de Materia Condensada, Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Coyoacán, Ciudad de México, México.0000-0003-1505-224410.21105/joss.02976https://doi.org/10.5281/zenodo.5514113M4, C++https://joss.theoj.org/papers/10.21105/joss.02976.pdfMaterials, Molecular dynamics, Pair Correlation Function, Plane Angle Distributiontag:joss.theoj.org,2005:Paper/22982021-09-06T01:28:18Z2021-09-07T00:00:22ZCoral: a parallel spectral solver for fluid dynamics and partial differential equationsacceptedv1.0.12021-01-07 23:05:47 UTC652021-09-06 01:28:18 UTC620212978BenjaminMiquelUniversité Paris-Saclay, CEA, CNRS, Service de Physique de l’Etat Condensé, 91191 Gif-sur-Yvette,France0000-0001-6283-038210.21105/joss.02978https://doi.org/10.5281/zenodo.5458888Fortran, Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.02978.pdffluid dynamics, PDE, fortran, chebyshev, plane layertag:joss.theoj.org,2005:Paper/24832021-05-18T18:46:43Z2021-05-19T00:02:45ZFielDHub: A Shiny App for Design of Experiments in Life Sciencesaccepted0.1.02021-03-11 22:06:10 UTC612021-05-18 18:46:43 UTC620213122DidierA.MurilloNorth Dakota State UniversitySalvadorA.GezanVSN InternationalAnaM.HeilmanNorth Dakota State UniversityThomasC.WalkNorth Dakota State UniversityJohanS.AparicioCIAT (International Center for Tropical Agriculture)RichardD.HorsleyNorth Dakota State University10.21105/joss.03122https://doi.org/10.5281/zenodo.4768611Rhttps://joss.theoj.org/papers/10.21105/joss.03122.pdfShiny, DOE, Unreplicated Designs, Partially-Replicated Designs, Plant Breedingtag:joss.theoj.org,2005:Paper/16702020-10-26T16:07:58Z2021-02-15T11:30:42ZPeacock.jl: Photonic crystals in Juliaacceptedv0.1.02020-05-22 13:59:24 UTC542020-10-26 16:07:58 UTC520202678SamuelJ.PalmerThe Blackett Laboratory, Imperial College London, London, SW7 2AZ, UK0000-0003-0485-7047VincenzoGianniniInstituto de Estructura de la Materia (IEM), Consejo Superior de Investigaciones Científicas (CSIC), Serrano 121, 28006, Madrid, Spain0000-0001-8025-496410.21105/joss.02678https://doi.org/10.5281/zenodo.4097236Juliahttps://joss.theoj.org/papers/10.21105/joss.02678.pdfphysics, optics, photonics, photonic crystals, photonic topological insulators, Maxwell's equations, metamaterials, plane wave expansion