JOSS Papers: phylogenetics

All Papers
2040
 Published Papers
1832
 Active Papers
208
published Published 3 months ago

BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees

Python C++ Cython
@jmcbroome
10.21105/joss.04433
published Published 12 months ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published about 1 year ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
published Published about 1 year ago

Ngesh: a Python library for synthetic phylogenetic data

Python
@tresoldi
10.21105/joss.03173
published Published almost 2 years ago

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

Python Perl
@huddlej
10.21105/joss.02906
published Published about 2 years ago

mcbette: model comparison using babette

R
@richelbilderbeek
10.21105/joss.02762
published Published about 3 years ago

Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments

Python
@marekborowiec
10.21105/joss.01635
published Published about 4 years ago

hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers

R
@daijiang
10.21105/joss.01041
published Published about 4 years ago

treemaker: A Python tool for constructing a Newick formatted tree from a set of classifications.

R Python
@SimonGreenhill
10.21105/joss.01040
published Published about 4 years ago

rr2: An R package to calculate $R^2$s for regression models

R
@arives
10.21105/joss.01028
Displaying papers 1 - 10 of 18 in total

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