published Published 6 months ago
Nextclade: clade assignment, mutation calling and quality control for viral genomes
Ruby C++
published Published 8 months ago
ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees
Python JavaScript
published Published over 1 year ago
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
Python Perl
published Published over 2 years ago
Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments
Python
published Published over 3 years ago
hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers
R
published Published over 3 years ago
treemaker: A Python tool for constructing a Newick formatted tree from a set of classifications.
R Python
published Published almost 4 years ago