JOSS Papers: phylogenetics

All Papers
3185
 Published Papers
2833
 Active Papers
352
published Published about 2 months ago

PhyloX: A Python package for complete phylogenetic network workflows

Python
@RemieJanssen
10.21105/joss.06427
published Published 3 months ago

LinguiPhyR: A Package for Linguistic Phylogenetic Analysis in R

R
@marccanby
10.21105/joss.06201
published Published 4 months ago

DendroPy 5: a mature Python library for phylogenetic computing

Python R Turing
@mmore500
10.21105/joss.06943
published Published 4 months ago

TREvoSim v3: An individual based simulation for generating trees and character data

C++ R
@RussellGarwood
10.21105/joss.06722
published Published about 2 years ago

smot: a python package and CLI tool for contextual phylogenetic subsampling

Python
@arendsee
10.21105/joss.04193
published Published about 2 years ago

teiphy: A Python Package for Converting TEI XML Collations to NEXUS and Other Formats

Python
@jjmccollum
10.21105/joss.04879
published Published about 2 years ago

hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations

Python
@mmore500
10.21105/joss.04866
published Published over 2 years ago

BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees

Python C++ Cython
@jmcbroome
10.21105/joss.04433
published Published about 3 years ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published over 3 years ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
Displaying papers 1 - 10 of 25 in total

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ISSN 2475-9066