published Published 3 months ago
smot: a python package and CLI tool for contextual phylogenetic subsampling
Python
published Published 3 months ago
teiphy: A Python Package for Converting TEI XML Collations to NEXUS and Other Formats
Python
published Published 4 months ago
hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations
Python
published Published 7 months ago
BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees
Python C++ Cython
published Published over 1 year ago
Nextclade: clade assignment, mutation calling and quality control for viral genomes
Ruby C++
published Published over 1 year ago
ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees
Python JavaScript
published Published about 2 years ago
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
Python Perl
published Published over 3 years ago