JOSS Papers: phylogenetics

All Papers
2188
 Published Papers
1956
 Active Papers
232
published Published 3 months ago

smot: a python package and CLI tool for contextual phylogenetic subsampling

Python
@arendsee
10.21105/joss.04193
published Published 3 months ago

teiphy: A Python Package for Converting TEI XML Collations to NEXUS and Other Formats

Python
@jjmccollum
10.21105/joss.04879
published Published 4 months ago

hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations

Python
@mmore500
10.21105/joss.04866
published Published 7 months ago

BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees

Python C++ Cython
@jmcbroome
10.21105/joss.04433
published Published over 1 year ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published over 1 year ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
published Published over 1 year ago

Ngesh: a Python library for synthetic phylogenetic data

Python
@tresoldi
10.21105/joss.03173
published Published about 2 years ago

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

Python Perl
@huddlej
10.21105/joss.02906
published Published over 2 years ago

mcbette: model comparison using babette

R
@richelbilderbeek
10.21105/joss.02762
published Published over 3 years ago

Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments

Python
@marekborowiec
10.21105/joss.01635
Displaying papers 1 - 10 of 21 in total

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