JOSS Papers: phylogenetics

All Papers
3006
 Published Papers
2685
 Active Papers
321
published Published 11 days ago

DendroPy 5: a mature Python library for phylogenetic computing

Python R Turing
@mmore500
10.21105/joss.06943
published Published 22 days ago

TREvoSim v3: An individual based simulation for generating trees and character data

C++ R
@RussellGarwood
10.21105/joss.06722
published Published almost 2 years ago

smot: a python package and CLI tool for contextual phylogenetic subsampling

Python
@arendsee
10.21105/joss.04193
published Published almost 2 years ago

teiphy: A Python Package for Converting TEI XML Collations to NEXUS and Other Formats

Python
@jjmccollum
10.21105/joss.04879
published Published almost 2 years ago

hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations

Python
@mmore500
10.21105/joss.04866
published Published about 2 years ago

BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees

Python C++ Cython
@jmcbroome
10.21105/joss.04433
published Published almost 3 years ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published almost 3 years ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
published Published almost 3 years ago

Ngesh: a Python library for synthetic phylogenetic data

Python
@tresoldi
10.21105/joss.03173
published Published over 3 years ago

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

Python Perl
@huddlej
10.21105/joss.02906
Displaying papers 1 - 10 of 23 in total

Journal of Open Source Software is an affiliate of the Open Source Inititative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Table of Contents
Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066