JOSS Papers: phylogenetics

All Papers
1044
 Published Papers
909
 Active Papers
135
published Published 8 months ago

Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments

Python
@marekborowiec
10.21105/joss.01635
published Published over 1 year ago

hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers

R
@daijiang
10.21105/joss.01041
published Published over 1 year ago

treemaker: A Python tool for constructing a Newick formatted tree from a set of classifications.

R Python
@SimonGreenhill
10.21105/joss.01040
published Published over 1 year ago

rr2: An R package to calculate $R^2$s for regression models

R
@arives
10.21105/joss.01028
published Published almost 2 years ago

opt\_einsum - A Python package for optimizing contraction order for einsum-like expressions

Python
@dgasmith
10.21105/joss.00753
published Published almost 2 years ago

phylogram: an R package for phylogenetic analysis with nested lists

R
@shaunpwilkinson
10.21105/joss.00790
published Published almost 2 years ago

SuchTree: Fast, thread-safe computations with phylogenetic trees

Python Jupyter Notebook
@ryneches
10.21105/joss.00678
published Published about 2 years ago

Phylen: automatic phylogenetic reconstruction using the EggNOG database

R
@giraola
10.21105/joss.00593
published Published over 2 years ago

phyphy: Python package for facilitating the execution and parsing of HyPhy standard analyses

Python
@sjspielman
10.21105/joss.00514
published Published about 3 years ago

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs.

Python
@andrewjpage
10.21105/joss.00243
Displaying papers 1 - 10 of 12 in total

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