tag:joss.theoj.org,2005:/papers/tagged/orientationJournal of Open Source Software2023-10-05T09:52:45ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44392023-10-05T09:52:45Z2023-10-06T00:01:05ZNORDic: a Network-Oriented package for the Repurposing of Drugsacceptedv2.4.22023-04-18 11:32:05 UTC902023-10-05 09:52:45 UTC820235532ClémenceRédaUniversité Paris Cité, Neurodiderot, Inserm, F-75019 Paris, France0000-0003-3238-0258AndréeDelahaye-DuriezUniversité Paris Cité, Neurodiderot, Inserm, F-75019 Paris, France, Université Sorbonne Paris Nord, UFR de santé, médecine et biologie humaine, F-93000 Bobigny, France, Unité fonctionnelle de médecine génomique et génétique clinique, Hôpital Jean Verdier, AP-HP, F-93140 Bondy, France0000-0003-4324-737210.21105/joss.05532https://doi.org/10.5281/zenodo.8355529Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05532.pdfnetwork analysis, boolean network, network inference, biomarker identification, drug repurposingtag:joss.theoj.org,2005:Paper/45812023-09-14T00:56:46Z2023-09-15T00:01:17ZCMakePPLang: An object-oriented extension to CMakeacceptedv1.0.02023-07-06 19:51:31 UTC892023-09-14 00:56:46 UTC820235711ZacheryCrandallDepartment of Chemistry, Iowa State University, USA, Chemical and Biological Sciences, Ames National Laboratory, USA0000-0003-3161-9378BlakeMulnixDepartment of Chemistry, Iowa State University, USA, Chemical and Biological Sciences, Ames National Laboratory, USABrandenButlerDepartment of Chemistry, Iowa State University, USA, Chemical and Biological Sciences, Ames National Laboratory, USATheresaL.WindusDepartment of Chemistry, Iowa State University, USA, Chemical and Biological Sciences, Ames National Laboratory, USA0000-0001-6065-3167RyanM.RichardDepartment of Chemistry, Iowa State University, USA, Chemical and Biological Sciences, Ames National Laboratory, USA0000-0003-4235-517910.21105/joss.05711https://doi.org/10.5281/zenodo.8339121https://joss.theoj.org/papers/10.21105/joss.05711.pdfCMake, build tools, cross-platform, C++tag:joss.theoj.org,2005:Paper/34372022-10-11T16:37:07Z2022-10-12T06:58:04ZMechkit: A continuum mechanics toolkit in Pythonacceptedv0.3.92022-03-23 15:39:34 UTC782022-10-11 16:37:07 UTC720224389JulianKarlBauerInstitute of Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0002-4931-5869PhilippLotharKinonInstitute of Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0002-4128-5124JonasHundDepartment of Structural Engineering, Norwegian University of Science and Technology (NTNU), Trondheim, Norway0000-0003-2140-4285LisaLatussekInstitute of Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0002-1093-737XNilsMeyerInstitute of Vehicle System Technology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0001-6291-6741ThomasBöhlkeChair for Continuum Mechanics, Institute of Engineering Mechanics, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany0000-0001-6884-053010.21105/joss.04389https://doi.org/10.5281/zenodo.7185691Pythonhttps://joss.theoj.org/papers/10.21105/joss.04389.pdfmechanics, continuum-mechanics, mechanics-of-materials, linear elasticity, fiber orientation tensors, notationtag:joss.theoj.org,2005:Paper/32442022-06-25T15:33:11Z2022-06-26T00:01:20ZSimpleFOC: A Field Oriented Control (FOC) Library for Controlling Brushless Direct Current (BLDC) and Stepper Motorsacceptedv2.22021-12-12 15:59:32 UTC742022-06-25 15:33:11 UTC720224232AntunSkuricINRIA Bordeaux, AUCTUS team, Université de Bordeaux, France0000-0002-3323-4482HasanSinanBankCalifornia State University, Chico, United States of America, Craftnetics Inc., United States of America0000-0002-0626-2664RichardUngerCommunity MemberOwenWilliamsCommunity MemberDavidGonzález-ReyesCommunity Member0000-0002-1535-300710.21105/joss.04232https://doi.org/10.5281/zenodo.6510536C++, Chttps://joss.theoj.org/papers/10.21105/joss.04232.pdfMotor Control, Dynamical Robot Control, Applied Control Theory, cpptag:joss.theoj.org,2005:Paper/33102022-04-22T19:04:53Z2022-04-26T15:09:21ZGBOML: Graph-Based Optimization Modeling Languageacceptedv0.1.02022-01-28 20:55:06 UTC722022-04-22 19:04:53 UTC720224158BardhylMiftariDepartment of Electrical Engineering and Computer Science, University of Liège0000-0001-5334-0234MathiasBergerDepartment of Electrical Engineering and Computer Science, University of Liège0000-0003-3081-4833HatimDjelassiDepartment of Electrical Engineering and Computer Science, University of LiègeDamienErnstDepartment of Electrical Engineering and Computer Science, University of Liège, LTCI, Telecom Paris, Institut Polytechnique de Paris0000-0002-3035-826010.21105/joss.04158https://doi.org/10.5281/zenodo.6470268Pythonhttps://joss.theoj.org/papers/10.21105/joss.04158.pdfOptimization, Mixed-Integer Linear Programming, Algebraic Modeling Language, Object-Oriented Modeling, Structured Models, Decomposition Methodstag:joss.theoj.org,2005:Paper/31102021-12-24T16:41:35Z2021-12-25T00:01:13ZSepia, a taxonomy oriented read classifier in Rustacceptedv0.0.22021-10-14 16:38:44 UTC682021-12-24 16:41:35 UTC620213839HenkC. denBakkerCenter for Food Safety, University of Georgia, Griffin, GA, USA0000-0002-4086-1580LeeS.KatzCenter for Food Safety, University of Georgia, Griffin, GA, USA, Enteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USA0000-0002-2533-916110.21105/joss.03839https://doi.org/10.5281/zenodo.5787248Python, Rusthttps://joss.theoj.org/papers/10.21105/joss.03839.pdfread classification, taxonomytag:joss.theoj.org,2005:Paper/26782021-12-01T22:36:48Z2021-12-02T00:02:30ZpyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamicsaccepted1.02021-05-14 19:14:13 UTC682021-12-01 22:36:48 UTC620213325ArthurVoroninSteinbuch Centre for Computing, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany, Department of Physics, Karlsruhe Institute of Technology, Karlsruhe, Germany0000-0002-5804-5151AlexanderSchugInstitute for Advanced Simulation, Jülich Supercomputing Center, Jülich, Germany, Faculty of Biology, University of Duisburg-Essen, Duisburg, Germany0000-0002-0534-502X10.21105/joss.03325https://doi.org/10.5281/zenodo.5744760Pythonhttps://joss.theoj.org/papers/10.21105/joss.03325.pdfGROMACS, physics, biology, replica exchange, molecular dynamics, contact biastag:joss.theoj.org,2005:Paper/27582021-09-01T13:36:16Z2021-09-02T00:01:23ZOGRe: An Object-Oriented General Relativity Package for Mathematicaacceptedv1.52021-06-13 20:21:50 UTC652021-09-01 13:36:16 UTC620213416BarakShoshanyDepartment of Physics, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, L2S 3A1, Canada0000-0003-2222-127X10.21105/joss.03416https://doi.org/10.5281/zenodo.5168868Mathematicahttps://joss.theoj.org/papers/10.21105/joss.03416.pdfWolfram Language, Scientific Computing, Differential Geometry, General Relativity, Tensors, Tensor calculustag:joss.theoj.org,2005:Paper/21462021-06-25T23:31:25Z2021-06-26T00:00:37Zh5fortran: object-oriented polymorphic Fortran interface for HDF5 file IOacceptedv3.4.12020-11-06 06:54:11 UTC622021-06-25 23:31:25 UTC620212842MichaelHirschBoston University0000-0002-1637-652610.21105/joss.02842https://doi.org/10.5281/zenodo.4946859Fortran, C, Python, Mesonhttps://joss.theoj.org/papers/10.21105/joss.02842.pdftag:joss.theoj.org,2005:Paper/23642021-04-06T21:05:32Z2021-04-07T00:01:17ZgaussplotR: Fit, Predict and Plot 2D-Gaussians in Racceptedv0.2.32021-01-31 23:56:26 UTC602021-04-06 21:05:32 UTC620213074VikramB.BaligaDepartment of Zoology, University of British Columbia, Vancouver, British Colombia, Canada V6T 1Z40000-0002-9367-897410.21105/joss.03074https://doi.org/10.5281/zenodo.4657750Rhttps://joss.theoj.org/papers/10.21105/joss.03074.pdf2D-Gaussian, Gaussian fit, Gaussian orientation, nonlinear least squares