tag:joss.theoj.org,2005:/papers/tagged/optimization?page=1Journal of Open Source Software2024-03-13T19:36:59ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/50542024-03-13T19:36:59Z2024-03-14T09:10:13ZPyProximal - scalable convex optimization in Pythonacceptedv0.7.02023-12-31 11:55:29 UTC952024-03-13 19:36:59 UTC920246326MatteoRavasiEarth Science and Engineering, Physical Sciences and Engineering (PSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia0000-0003-0020-2721MarcusValtonenÖrnhagEricsson Research, Lund, Sweden.0000-0001-8687-227XNickLuikenEarth Science and Engineering, Physical Sciences and Engineering (PSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia0000-0003-3307-1748OlivierLeblancISPGroup, INMA/ICTEAM, UCLouvain, Louvain-la-Neuve, Belgium.0000-0003-3641-1875EnekoUruñuelaBasque Center on Cognition, Brain and Language (BCBL), Donostia-San Sebastián, Spain.0000-0001-6849-908810.21105/joss.06326https://doi.org/10.5281/zenodo.10805997Pythonhttps://joss.theoj.org/papers/10.21105/joss.06326.pdfconvex optimization, proximaltag:joss.theoj.org,2005:Paper/48622024-03-05T15:11:10Z2024-03-06T16:03:15ZPDOPT: A Python library for Probabilistic Design space exploration and OPTimisationacceptedv0.452023-10-23 15:08:48 UTC952024-03-05 15:11:10 UTC920246110AndreaSpinelliCentre for Propulsion and Thermal Power, Cranfield University, MK430AL, UK0000-0002-3064-3387TimoleonKipourosCentre for Propulsion and Thermal Power, Cranfield University, MK430AL, UK0000-0003-3392-283X10.21105/joss.06110https://doi.org/10.5281/zenodo.10732017Pythonhttps://joss.theoj.org/papers/10.21105/joss.06110.pdfComputational Engineering, Design Space Exploration, Set-Based Design, Design Uncertainty, Multi-Objective Optimizationtag:joss.theoj.org,2005:Paper/51272024-02-29T21:34:54Z2024-03-01T00:00:22ZCoSApp: a Python library to create, simulate and design complex systems.acceptedv0.15.32024-01-23 12:22:22 UTC942024-02-29 21:34:54 UTC920246292ÉtienneLacSafran Tech, Digital Sciences & Technologies Department, France0000-0002-6964-0044GuySpiegeleertwiinIT, France0009-0005-9828-0550AdrienDelsalletwiinIT, France0009-0001-8126-4045FrédéricCollonvalWebScIT, France0009-0000-3579-3424Duc-TrungLêQuantStack, France0009-0000-0415-8399MathiasMalandainInria centre at Rennes University, France0000-0001-9740-491410.21105/joss.06292https://doi.org/10.5281/zenodo.10722403Python, C#, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06292.pdfMultidisciplinary Design Analysis and Optimization, System designtag:joss.theoj.org,2005:Paper/45382024-02-29T10:31:27Z2024-03-01T17:39:01ZPyBADS: Fast and robust black-box optimization in Pythonacceptedv1.0.02023-06-11 13:10:30 UTC942024-02-29 10:31:27 UTC920245694GurjeetSangraSinghUniversity of Geneva, University of Applied Sciences and Arts Western Switzerland (HES-SO)0009-0008-2340-5867LuigiAcerbiUniversity of Helsinki0000-0001-7471-733610.21105/joss.05694https://doi.org/10.5281/zenodo.10696782Pythonhttps://joss.theoj.org/papers/10.21105/joss.05694.pdfBayesian optimization, Black-box optimization, Optimization, Machine learning, Gaussian Processestag:joss.theoj.org,2005:Paper/48972024-02-14T14:57:13Z2024-02-19T16:23:56ZPyTASER: Simulating transient absorption spectroscopy (TAS) for crystals from first principlesacceptedv2.2.02023-10-24 15:23:57 UTC942024-02-14 14:57:13 UTC920245999SavyasanchiAggarwalThomas Young Centre and Department of Materials, Imperial College London, London, United Kingdom, Thomas Young Centre and Department of Chemistry, University College London, London, United Kingdom0009-0007-7128-3465SeánR.KavanaghThomas Young Centre and Department of Materials, Imperial College London, London, United Kingdom, Thomas Young Centre and Department of Chemistry, University College London, London, United Kingdom0000-0003-4577-9647YoungWonWooThomas Young Centre and Department of Materials, Imperial College London, London, United Kingdom, Department of Materials Science and Engineering, Yonsei University, Seoul, KoreaLucasG.VergaThomas Young Centre and Department of Materials, Imperial College London, London, United Kingdom0000-0002-7453-238XAlexM.GanoseDepartment of Chemistry, Imperial College London, London, United Kingdom0000-0002-4486-3321AronWalshThomas Young Centre and Department of Materials, Imperial College London, London, United Kingdom0000-0001-5460-703310.21105/joss.05999https://doi.org/10.5281/zenodo.10634762Pythonhttps://joss.theoj.org/papers/10.21105/joss.05999.pdfmaterials science, first-principles, optics, differential-absorption, spectroscopy, density functional theorytag:joss.theoj.org,2005:Paper/47512024-02-06T01:10:32Z2024-02-07T00:00:42ZOpyrability: A Python package for process operability analysisacceptedv1.4.32023-09-12 17:47:45 UTC942024-02-06 01:10:32 UTC920245966VictorAlvesDepartment of Chemical and Biomedical Engineering, West Virginia University, Morgantown, West Virginia, USASanDinhDepartment of Chemical and Biomedical Engineering, West Virginia University, Morgantown, West Virginia, USA, Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, USAJohnR.KitchinDepartment of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, USAVitorGazzaneoDepartment of Chemical and Biomedical Engineering, West Virginia University, Morgantown, West Virginia, USAJuanC.CarrascoDepartment of Chemical Engineering, Universidad de Concepción, Concepción, ChileFernandoV.LimaDepartment of Chemical and Biomedical Engineering, West Virginia University, Morgantown, West Virginia, USA10.21105/joss.05966https://doi.org/10.5281/zenodo.10620959Pythonhttps://joss.theoj.org/papers/10.21105/joss.05966.pdfProcess systems engineering, Process operability, Process design and control, Computational geometry, Nonlinear optimizationtag:joss.theoj.org,2005:Paper/46092024-02-05T20:21:25Z2024-02-06T00:00:57Zprospect: an R package to link leaf optical properties with their chemical and structural properties with the leaf model PROSPECTacceptedv1.3.02023-07-17 16:12:52 UTC942024-02-05 20:21:25 UTC920246027Jean-BaptisteFéretTETIS, INRAE, AgroParisTech, CIRAD, CNRS, Université Montpellier, Montpellier, France0000-0002-0151-1334Floriande BoissieuTETIS, INRAE, AgroParisTech, CIRAD, CNRS, Université Montpellier, Montpellier, France0000-0002-2185-995210.21105/joss.06027https://doi.org/10.5281/zenodo.10480410Rhttps://joss.theoj.org/papers/10.21105/joss.06027.pdfleaf spectroscopy, vegetation biophysical properties, remote sensing, physical modeling, iterative optimizationtag:joss.theoj.org,2005:Paper/49122023-12-18T16:42:37Z2023-12-19T00:00:28ZlibEnsemble: A complete Python toolkit for dynamic ensembles of calculationsacceptedv1.0.02023-11-01 13:13:50 UTC922023-12-18 16:42:37 UTC820236031StephenHudsonMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0002-7500-6138JeffreyLarsonMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0001-9924-2082John-LukeNavarroMathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA0000-0002-9916-9038StefanM.WildAMCR Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA, Industrial Engineering and Management Sciences, Northwestern University, Evanston, IL, USA0000-0002-6099-277210.21105/joss.06031https://doi.org/10.5281/zenodo.10391387Python, MATLAB, Perl, Chttps://joss.theoj.org/papers/10.21105/joss.06031.pdfensemble workflows, optimization and learningtag:joss.theoj.org,2005:Paper/45552023-12-05T14:34:22Z2023-12-06T00:00:47ZBoxKit: A Python library to manage analysis of block-structured simulation datasetsaccepted2023.062023-06-20 21:41:09 UTC922023-12-05 14:34:22 UTC820235649AkashDhruvArgonne National Laboratory, USA0000-0003-4997-321X10.21105/joss.05649https://doi.org/10.5281/zenodo.10257565Python, C++https://joss.theoj.org/papers/10.21105/joss.05649.pdfblock structured datasets, simulation analysis, machine learning, performance optimizationtag:joss.theoj.org,2005:Paper/37092023-10-15T06:29:48Z2023-10-19T09:42:05ZOT_Analysis: a software for rich analysis of force curves when probing living cells with optical tweezersacceptedv0.2.862022-07-07 16:20:47 UTC902023-10-15 06:29:48 UTC820234877ThierryGallianoInserm UMR 1067, CNRS UMR 7333, AMU UM61, The Turing Centre for Living Systems (CENTURI) ; Lab. Adhésion et Inflammation ; Marseille - FranceGuillaumeGayFrance Bio Imaging ; Montpellier - France0000-0002-5444-5246LaurentLimozinInserm UMR 1067, CNRS UMR 7333, AMU UM61, The Turing Centre for Living Systems (CENTURI) ; Lab. Adhésion et Inflammation ; Marseille - France0000-0001-9523-8086Pierre-HenriPuechInserm UMR 1067, CNRS UMR 7333, AMU UM61, The Turing Centre for Living Systems (CENTURI) ; Lab. Adhésion et Inflammation ; Marseille - France0000-0002-8521-068510.21105/joss.04877https://doi.org/10.5281/zenodo.8345307Pythonhttps://joss.theoj.org/papers/10.21105/joss.04877.pdfoptical tweezers, cell biology, mechanobiology