tag:joss.theoj.org,2005:/papers/tagged/open%20scienceJournal of Open Source Software2024-02-21T08:51:15ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/43002024-02-21T08:51:15Z2024-02-23T09:04:14ZReducing the efforts to create reproducible analysis code with FieldTripacceptedhttps://github.com/fieldtrip/fieldtrip/commit/9cfc0a7e7b7871a1d9938552ce60041c59f3a5532023-03-10 17:12:47 UTC942024-02-21 08:51:15 UTC920245566MatsW.j.van EsDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, Oxford Centre for Human Brain Activity, Department of Psychiatry, University of Oxford, United Kingdom, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, United Kingdom0000-0002-7133-509XEelkeSpaakDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0002-2018-3364Jan-MathijsSchoffelenDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0003-0923-6610RobertOostenveldDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, NatMEG, Karolinska Institutet, Stockholm, Sweden0000-0002-1974-129310.21105/joss.05566https://doi.org/10.5281/zenodo.10495308MATLAB, Mathematicahttps://joss.theoj.org/papers/10.21105/joss.05566.pdfFieldTrip Toolbox, reproducibility, analysis pipeline, open science, MEG, EEGtag:joss.theoj.org,2005:Paper/47702024-01-25T22:35:43Z2024-01-26T10:44:05Zstanscofi and benchscofi: a new standard for drug repurposing by collaborative filteringacceptedv2.0.02023-09-20 18:28:20 UTC932024-01-25 22:35:43 UTC920245973ClémenceRédaDepartment of Systems Biology and Bioinformatics, University of Rostock, Rostock, G-18051, Germany0000-0003-3238-0258Jill-JênnVieSoda Team, Inria Saclay, F-91120 Palaiseau, France0000-0002-9304-2220OlafWolkenhauerDepartment of Systems Biology and Bioinformatics, University of Rostock, Rostock, G-18051, Germany, Leibniz-Institute for Food Systems Biology, Freising, G-85354, Germany, Stellenbosch Institute of Advanced Study, Wallenberg Research Centre, Stellenbosch, SA-7602, South Africa0000-0001-6105-293710.21105/joss.05973https://doi.org/10.5281/zenodo.10561760Pythonhttps://joss.theoj.org/papers/10.21105/joss.05973.pdfdrug repurposing, collaborative filtering, open science, science reproducibilitytag:joss.theoj.org,2005:Paper/38302023-01-18T22:35:19Z2023-01-19T00:01:23ZSlideRule: Enabling rapid, scalable, open science for the NASA ICESat-2 mission and beyondacceptedv1.4.62022-08-22 23:26:43 UTC812023-01-18 22:35:19 UTC820234982DavidSheanUniversity of Washington, Department of Civil and Environmental Engineering0000-0003-3840-3860J.p.SwinskiNASA Goddard Space Flight CenterBenSmithUniversity of Washington, Applied Physics LaboratoryTylerSutterleyUniversity of Washington, Applied Physics LaboratoryScottHendersonUniversity of Washington, Department of Earth and Space Sciences, University of Washington, eScience Institute0000-0003-0624-4965CarlosUgarteNASA Goddard Space Flight CenterEricLidwaNASA Goddard Space Flight CenterThomasNeumannNASA Goddard Space Flight Center10.21105/joss.04982https://doi.org/10.5281/zenodo.7542007https://joss.theoj.org/papers/10.21105/joss.04982.pdfPython, NASA, ICESat-2, Glacier, Earth observationtag:joss.theoj.org,2005:Paper/24852021-10-28T17:50:32Z2021-10-31T11:00:31ZQlunc: Quantification of lidar uncertaintyacceptedv0912021-03-12 11:46:34 UTC662021-10-28 17:50:32 UTC620213211FranciscoCostaStuttgart Wind Energy (SWE), Allmandring 5b, 70569 Stuttgart, Germany0000-0003-1318-9677AndrewCliftonStuttgart Wind Energy (SWE), Allmandring 5b, 70569 Stuttgart, Germany0000-0001-9698-5083NikolaVasiljevicDTU Wind Energy, Frederiksborgvej 399, 4000 Roskilde Denmark0000-0002-9381-9693InesWürthStuttgart Wind Energy (SWE), Allmandring 5b, 70569 Stuttgart, Germany0000-0002-1365-024310.21105/joss.03211https://doi.org/10.5281/zenodo.5592248Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.03211.pdfwind lidar, lidar hardware uncertainty, OpenScience, OpenLidar, digital twintag:joss.theoj.org,2005:Paper/20612021-06-15T12:41:58Z2021-06-16T00:00:46ZOpenSCM Two Layer Model: A Python implementation of the two-layer climate modelacceptedv0.1.22020-10-07 01:33:19 UTC622021-06-15 12:41:58 UTC620212766ZebedeeNichollsAustralian-German Climate & Energy College, The University of Melbourne, Parkville, Victoria, Australia, School of Geography, Earth and Atmosphere Sciences, The University of Melbourne, Parkville, Victoria, Australia, Climate Resource, Northcote, Victoria, Australia0000-0002-4767-2723JaredLewisAustralian-German Climate & Energy College, The University of Melbourne, Parkville, Victoria, Australia, School of Geography, Earth and Atmosphere Sciences, The University of Melbourne, Parkville, Victoria, Australia, Climate Resource, Northcote, Victoria, Australia0000-0002-8155-892410.21105/joss.02766https://doi.org/10.5281/zenodo.4950772Pythonhttps://joss.theoj.org/papers/10.21105/joss.02766.pdfclimate science, temperature projections, simple climate model, energy balance, reduced complexity climate modeltag:joss.theoj.org,2005:Paper/16232020-09-16T17:51:40Z2021-02-15T11:30:45Zarcos and arcospy: R and Python packages for accessing the DEA ARCOS database from 2006 - 2014acceptedarcos (1.1); arcospy (1.1.0)2020-05-20 19:32:19 UTC532020-09-16 17:51:40 UTC520202450StevenRichThe Washington PostAndrewBaTranThe Washington PostAaronWilliamsThe Washington PostJasonHoltThe Washington PostJefferySauerUniversity of Maryland, College Park, Department of Geographical Sciences0000-0002-8581-6919TaylorM.OshanUniversity of Maryland, College Park, Department of Geographical Sciences10.21105/joss.02450https://doi.org/10.5281/zenodo.4029306https://joss.theoj.org/papers/10.21105/joss.02450.pdfR, Python, API, Open science, Healthtag:joss.theoj.org,2005:Paper/14482020-02-06T16:11:01Z2021-02-15T11:31:07Zosfr: An R Interface to the Open Science Frameworkacceptedv0.2.72020-01-21 19:01:29 UTC462020-02-06 16:11:01 UTC520202071AaronR.WolenTransplant Research Institute, Department of Surgery, University of Tennessee Health Science Center0000-0003-2542-2202ChrisH.j.HartgerinkLiberate Science GmbH0000-0003-1050-6809RyanHafenDepartment of Statistics, Purdue UniversityBrianG.RichardsMerkle Group Inc.CourtneyK.SoderbergCenter for Open Science0000-0003-1227-7042TimothyP.YorkData Science Lab, Department of Human and Molecular Genetics, Virginia Commonwealth University0000-0003-4068-428610.21105/joss.02071https://doi.org/10.5281/zenodo.3625248Rhttps://joss.theoj.org/papers/10.21105/joss.02071.pdfopen science, reproducible research, project managementtag:joss.theoj.org,2005:Paper/6192019-07-26T06:19:43Z2021-02-15T11:33:01ZVIVO: a system for research discoveryacceptedv1.10.02018-09-12 20:14:54 UTC392019-07-26 06:19:43 UTC420191182MichaelConlonUniversity of Florida, Gainesville, Florida, US0000-0002-1304-8447AndrewWoodsDuraspace, Inc., Beaverton, OR, US0000-0002-8318-4225GrahamTriggsDuraspace, Inc., Beaverton, OR, US, Technische Informationsbibliothek (TIB) – German National Library of Science and Technology, Hannover, DE0000-0001-8530-8917RalphO'FlinnUniversity of Alabama Birmingham, Birmingham, AL, US0000-0003-4002-1335MuhammadJavedCornell University, Ithaca, NY, US0000-0001-9770-7640JimBlakeCornell University, Ithaca, NY, US0000-0002-2487-2554BenjaminGrossUNAVCO, Inc., Boulder, CO, US, Clarivate Analytics, Inc., Philadelphia, PA, US0000-0002-7908-1987QaziAzim IjazAhmadTechnische Informationsbibliothek (TIB) – German National Library of Science and Technology, Hannover, DE0000-0001-8959-6370SabihAliDigital Science, London, UK0000-0002-7140-8754MartinBarberTechnische Informationsbibliothek (TIB) – German National Library of Science and Technology, Hannover, DE0000-0001-7924-0741DonElsborgUniversity of Colorado, Boulder, CO, USKitioFofackUniversité du Québec à Montréal, Montréal, QC, CA0000-0002-6187-4436ChristianHauschkeTechnische Informationsbibliothek (TIB) – German National Library of Science and Technology, Hannover, DE0000-0003-2499-7741VioletaIlikColumbia University, New York, NY, US0000-0003-2588-3084HudaKhanCornell University, Ithaca, NY, US0000-0001-5156-4621TedLawlessClarivate Analytics, Inc., Philadelphia, PA, US, Brown University, Providence, RI, US0000-0002-3287-5202JacobLevernierUniversity of Pennsylvania, Philadelphia, PA, US0000-0003-1563-7314BrianLoweOntocale SRL, Bucharest, RO0000-0002-8143-6345JoseLuisMartinUniversidad Carlos III de Madrid, Madrid, ESSteveMcKayPlum Analytics, Inc., Philadelphia, PA, USSimonPorterDigital Science, London, UK0000-0002-6151-8423TatianaWaltherTechnische Informationsbibliothek (TIB) – German National Library of Science and Technology, Hannover, DE0000-0001-8127-2988MarijaneWhiteOregon Health & Science University, Portland, OR, USStefanWolffSächsische Landesbibliothek Staats und Universitätsbibliothek, Dresden, DERebeccaYounesCornell University, Ithaca, NY, US10.21105/joss.01182https://doi.org/10.5281/zenodo.2639714Java, FreeMarker, Rubyhttps://joss.theoj.org/papers/10.21105/joss.01182.pdfontology, semantic-web, linked-data, research-discovery, open-scholarship, linked-open-data, open-sciencetag:joss.theoj.org,2005:Paper/3062017-11-13T00:00:00Z2021-02-15T11:33:49ZGenerating CodeMeta Metadata for R Packagesacceptedv0.1.12017-11-11 17:28:35 UTC192017-11-13 00:00:00 UTC22017454CarlBoettigerUniversity of California, Berkeley0000-0002-1642-628X10.21105/joss.00454https://doi.org/10.5281/zenodo.1048320Rhttps://joss.theoj.org/papers/10.21105/joss.00454.pdfmetadata, codemeta, ropensci, citation, credittag:joss.theoj.org,2005:Paper/2642017-10-08T00:00:00Z2021-02-15T11:33:56Zhmis: A python tool to visualize and analyze HMIS dataaccepted1.02017-08-25 06:54:07 UTC182017-10-08 00:00:00 UTC22017384SaraMaharSiena College0000-0003-0920-3042MatthewBellisSiena College0000-0002-6353-604310.21105/joss.00384https://doi.org/10.5281/zenodo.1002225Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.00384.pdfpython, hmis, homelessness, homeless, continuum of care, open source, data visualization, data science