tag:joss.theoj.org,2005:/papers/tagged/nucleotidesJournal of Open Source Software2023-07-20T11:29:57ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/41882023-07-20T11:29:57Z2023-07-27T07:02:54ZSeqPanther: Sequence manipulation and mutation statistics toolsetacceptedv1.0.02023-02-03 07:59:06 UTC872023-07-20 11:29:57 UTC820235305JamesEmmanuelSanKwaZulu Natal Research and Innovation Sequencing Platform, KRISP, University of KwaZulu Natal, Durban, South Africa, Centre for Epidemic Response and Innovation, CERI, University of Stellenbosch, Stellenbosch, South Africa0000-0002-5736-664XStephanievan WykCentre for Epidemic Response and Innovation, CERI, University of Stellenbosch, Stellenbosch, South Africa0000-0002-2655-8518HouriiyahTegallyKwaZulu Natal Research and Innovation Sequencing Platform, KRISP, University of KwaZulu Natal, Durban, South Africa, Centre for Epidemic Response and Innovation, CERI, University of Stellenbosch, Stellenbosch, South Africa0000-0002-7102-8540SimeonEcheYale University School of Medicine, New Haven, Connecticut, United States of America0000-0001-5494-8372EduanWilkinsonKwaZulu Natal Research and Innovation Sequencing Platform, KRISP, University of KwaZulu Natal, Durban, South Africa, Centre for Epidemic Response and Innovation, CERI, University of Stellenbosch, Stellenbosch, South Africa0000-0002-2503-9441AquillahM.KanziKwaZulu Natal Research and Innovation Sequencing Platform, KRISP, University of KwaZulu Natal, Durban, South Africa0000-0001-6081-9438Tuliode OliveiraKwaZulu Natal Research and Innovation Sequencing Platform, KRISP, University of KwaZulu Natal, Durban, South Africa, Centre for Epidemic Response and Innovation, CERI, University of Stellenbosch, Stellenbosch, South Africa, Department of Global Health, University of Washington, Seattle, WA, United States of America0000-0002-3027-5254AnmolM.KiranSchool of Biochemistry and Cell Biology, University College Cork, Cork, T12 XF62, Ireland0000-0003-2680-230310.21105/joss.05305https://doi.org/10.5281/zenodo.8126922Pythonhttps://joss.theoj.org/papers/10.21105/joss.05305.pdfBioinformatics, sequence analysis, NGS, codon, amino acid substitution, nucleotide substitution, INDELtag:joss.theoj.org,2005:Paper/7342018-11-27T15:05:43Z2021-02-15T11:32:46Zrestez: Create and Query a Local Copy of GenBank in Racceptedv1.0.02018-11-26 20:42:52 UTC312018-11-27 15:05:43 UTC320181102DominicJ.BennettGothenburg Global Biodiversity Centre, Box 461, SE-405 30 Gothenburg, Sweden, Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, SE-405 30 Gothenburg, Sweden0000-0003-2722-1359HannesHettlingNaturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The NetherlandsDanieleSilvestroGothenburg Global Biodiversity Centre, Box 461, SE-405 30 Gothenburg, Sweden, Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, SE-405 30 Gothenburg, Sweden0000-0003-0100-0961RutgerVosNaturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands0000-0001-9254-7318AlexandreAntonelliGothenburg Global Biodiversity Centre, Box 461, SE-405 30 Gothenburg, Sweden, Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, SE-405 30 Gothenburg, Sweden, Gothenburg Botanical Garden, SE 41319 Gothenburg, Sweden0000-0003-1842-929710.21105/joss.01102https://doi.org/10.5281/zenodo.1419755Rhttps://joss.theoj.org/papers/10.21105/joss.01102.pdfGenBank, nucleotides, DNA, sequence, NCBI, rstatstag:joss.theoj.org,2005:Paper/2802017-10-25T00:00:00Z2021-02-15T11:33:54ZENASearch: A Python library for interacting with ENA's APIaccepted0.1.12017-09-12 15:04:35 UTC182017-10-25 00:00:00 UTC22017418BéréniceBatutBioinformatics group, Freiburg, Germany0000-0001-9852-1987BjörnGrüningBioinformatics group, Freiburg, Germany0000-0002-3079-658610.21105/joss.00418https://doi.org/10.5281/zenodo.1034619Pythonhttps://joss.theoj.org/papers/10.21105/joss.00418.pdfEuropean Nucleotide Archive, API, REST, Galaxytag:joss.theoj.org,2005:Paper/2022017-07-13T00:00:00Z2021-02-15T11:34:06ZKindel: indel-aware consensus for nucleotide sequence alignmentsacceptedv0.2.02017-05-26 11:32:21 UTC152017-07-13 00:00:00 UTC22017282BedeConstantinidesEvolution and Genomic Sciences, University of Manchester, Manchester, UK0000-0002-3480-3819DavidL.RobertsonMRC-University of Glasgow Centre for Virus Research, Glasgow, UK0000-0001-6338-022110.21105/joss.00282https://doi.org/10.5281/zenodo.826723Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.00282.pdfbioinformatics, sequence analysis, genome assembly