tag:joss.theoj.org,2005:/papers/tagged/neuroimaging?page=2Journal of Open Source Software2019-12-18T14:40:14ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/13182019-12-18T14:40:14Z2021-02-15T11:31:25ZMNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysisacceptedv0.32019-11-04 17:26:29 UTC442019-12-18 14:40:14 UTC420191896StefanAppelhoffCenter for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877MatthewSandersonDepartment of Cognitive Sciences, Macquarie University, Sydney, Australia0000-0002-4645-8979TeonL.BrooksMozilla0000-0001-7344-3230Marijnvan VlietDepartment of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland0000-0002-6537-6899RomainQuentinHuman Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 208920000-0001-7659-3605ChrisHoldgrafUC Berkeley, Project Jupyter0000-0002-2391-0678MaximilienChaumonInstitut du cerveau et de la moelle épinière (ICM), Paris, France0000-0001-9664-8861EzequielMikulanDepartment of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy0000-0001-7259-6120KambizTavabiInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-1881-892XRichardHöchenbergerInstitute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany0000-0002-0380-4798DominikWelkeMax-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany0000-0002-5529-1998ClemensBrunnerInstitute of Psychology, University of Graz, Austria0000-0002-6030-2233AlexanderP.RockhillUniversity of Oregon, Eugene OR, USA0000-0003-3868-7453EricLarsonInstitute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA0000-0003-4782-5360AlexandreGramfortUniversité Paris-Saclay, Inria, CEA, Palaiseau, France0000-0001-9791-4404MainakJasAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA0000-0002-3199-902710.21105/joss.01896https://doi.org/10.5281/zenodo.3580273Pythonhttps://joss.theoj.org/papers/10.21105/joss.01896.pdfBIDS, MNE, neuroimaging, MEG, EEG, iEEGtag:joss.theoj.org,2005:Paper/8962019-09-19T08:55:29Z2021-02-15T11:32:30ZNiBetaSeries: task related correlations in fMRIacceptedv0.2.32019-02-19 16:32:41 UTC412019-09-19 08:55:29 UTC420191295JamesD.KentInterdisciplinary Graduate Program in Neuroscience, University of Iowa, Iowa City, United states of America0000-0002-4892-2659PeerHerholzMontréal Neurological Institute, McGill University Health Centre, Montreal, Quebec, Canada0000-0002-9840-625710.21105/joss.01295https://doi.org/10.5281/zenodo.3385339Pythonhttps://joss.theoj.org/papers/10.21105/joss.01295.pdfneuroscience, neuroimaging, BIDS, fMRItag:joss.theoj.org,2005:Paper/9062019-08-12T18:08:03Z2021-02-15T11:32:28ZPyBIDS: Python tools for BIDS datasetsaccepted0.8.02019-02-28 17:47:22 UTC402019-08-12 18:08:03 UTC420191294TalYarkoniUniversity of Texas at Austin0000-0002-6558-5113ChristopherJ.MarkiewiczStanford University0000-0002-6533-164XAlejandrode la VegaUniversity of Texas at Austin0000-0001-9062-3778KrzysztofJ.GorgolewskiStanford University0000-0003-3321-7583TaylorSaloFlorida International University0000-0001-9813-3167YaroslavO.HalchenkoDartmouth College0000-0003-3456-2493QuintenMcNamaraUniversity of Texas at AustinKristaDeStasioUniversity of Oregon0000-0002-3959-9060Jean-BaptistePolineMcGill University0000-0002-9794-749XDmitryPetrovUniversity of Southern CaliforniaValérieHayot-SassonConcordia University0000-0002-4830-4535DylanM.NielsonNational Institute of Mental Health0000-0003-4613-6643JohanCarlinMRC Cognition and Brain Sciences Unit0000-0003-0933-1239GregoryKiarMontreal Neurological Institute and Hospital0000-0001-8915-496XKirstieWhitakerAlan Turing Institute0000-0001-8498-4059ElizabethDuPreMontreal Neurological Institute and Hospital0000-0003-1358-196XAdinaWagnerOtto-von-Guericke University Magdeburg0000-0003-2917-3450LeeS.TirrellCorticoMetrics LLC0000-0001-9393-8361MainakJasTélécom ParisTech, France0000-0002-3199-9027MichaelHankeOtto-von-Guericke University Magdeburg0000-0001-6398-6370RussellA.PoldrackStanford University0000-0001-6755-0259OscarEstebanStanford University0000-0001-8435-6191StefanAppelhoffMax Planck Institute for Human Development, Berlin, Germany0000-0001-8002-0877ChrisHoldgrafUniversity of California at Berkeley0000-0002-2391-0678IslaStadenQueen Mary University London0000-0002-0795-1154BertrandThirionINRIA0000-0001-5018-7895DaveF.KleinschmidtRutgers University0000-0002-7442-2762JohnA.LeeNational Institute of Mental Health0000-0001-5884-4247MatteoVisconti Oleggiodi CastelloUniversity of California at Berkeley0000-0001-7931-5272MichaelP.NotterUniversity of Lausanne0000-0002-5866-047XRossBlairStanford University0000-0003-3007-105610.21105/joss.01294https://doi.org/10.5281/zenodo.3333492Pythonhttps://joss.theoj.org/papers/10.21105/joss.01294.pdfBIDS, neuroimagingtag:joss.theoj.org,2005:Paper/9022019-02-27T14:11:27Z2020-03-14T00:51:56Ztacmagic: Positron emission tomography analysis in Racceptedv0.2.02019-02-26 12:47:38 UTC342019-02-27 14:11:27 UTC420191281EricE.BrownDepartment of Psychiatry and Institute of Medical Science, University of Toronto, Toronto, Canada, Centre for Addiction and Mental Health, Toronto, Canada0000-0002-1575-260610.21105/joss.01281https://doi.org/10.5281/zenodo.2577947Rhttps://joss.theoj.org/papers/10.21105/joss.01281.pdfpositron emission tomography, biomedical imaging, neuroimaging, neuroscience, neuroinformaticstag:joss.theoj.org,2005:Paper/8472019-02-24T18:13:15Z2021-02-15T11:32:33ZAtlasReader: A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI imagesacceptedv0.0.32019-02-05 11:27:05 UTC342019-02-24 18:13:15 UTC420191257MichaelPhilippNotterThe Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland0000-0002-5866-047XDanGaleCentre for Neuroscience Studies, Queen's University, Kingston, Canada0000-0002-9082-1659PeerHerholzLaboratory for Multimodal Neuroimaging, Philipps-University Marburg, Hesse, Germany, International Laboratory for Brain, Music and Sound Research, Université de Montréal & McGill University, Montréal, Canada, McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada0000-0002-9840-6257RossMarkelloMcConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada0000-0003-1057-1336Marie-LaureNotter-BielserCentre Leenaards de la Mémoire, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland0000-0001-5507-4304KirstieWhitakerAlan Turing Institute, London, UK; Department of Psychiatry, University of Cambridge, Cambridge, UK0000-0001-8498-405910.21105/joss.01257https://doi.org/10.5281/zenodo.2575731Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01257.pdfneuroimaging, neuroscience, visualization, atlas, results investigationtag:joss.theoj.org,2005:Paper/5792018-10-09T09:36:01Z2021-02-15T11:33:08Zmrivis: Medical image visualization library for neuroscience in pythonaccepted0.32018-08-03 21:44:54 UTC302018-10-09 09:36:01 UTC32018897PradeepReddyRaamanaRotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada0000-0003-4662-0558StephenC.StrotherRotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada, Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada0000-0002-3198-217X10.21105/joss.00897https://doi.org/10.5281/zenodo.1450944Matlab, Pythonhttps://joss.theoj.org/papers/10.21105/joss.00897.pdfvisualization, neuroscience, alignment, neuroimaging, multimodal, development kittag:joss.theoj.org,2005:Paper/4502018-06-21T11:36:48Z2021-02-15T11:33:31ZQUIT: QUantitative Imaging Toolsacceptedv2.0.02018-03-27 10:36:34 UTC262018-06-21 11:36:48 UTC32018656TobiasC.WoodDepartment of Neuroimaging, King's College London0000-0001-7640-552010.21105/joss.00656https://doi.org/10.5281/zenodo.1292086Python, C++https://joss.theoj.org/papers/10.21105/joss.00656.pdfneuroimaging, mri, cpp, quantitative imaging