tag:joss.theoj.org,2005:/papers/tagged/network%20analysisJournal of Open Source Software2024-01-19T08:12:03ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/49042024-01-19T08:12:03Z2024-01-20T00:00:42ZCM++ - A Meta-method for Well-Connected Community Detectionacceptedv4.0.02023-10-29 23:28:31 UTC932024-01-19 08:12:03 UTC920246073VikramRamavarapuDepartment of Computer Science, University of Illinois Urbana-Champaign, IL 61801, USA0009-0001-8875-7213FábioJoseAyresInsper Institute, Sao Paulo, Brazil0009-0000-6821-4687MinhyukParkDepartment of Computer Science, University of Illinois Urbana-Champaign, IL 61801, USA0000-0002-8676-7565VidyaKamathPailodiDepartment of Computer Science, University of Illinois Urbana-Champaign, IL 61801, USA0009-0000-0987-5901JoãoAlfredo CardosoLamyInsper Institute, Sao Paulo, Brazil0009-0005-4744-4754TandyWarnowDepartment of Computer Science, University of Illinois Urbana-Champaign, IL 61801, USA0000-0001-7717-3514GeorgeChackoDepartment of Computer Science, University of Illinois Urbana-Champaign, IL 61801, USA0000-0002-2127-189210.21105/joss.06073https://doi.org/10.5281/zenodo.10501118Python, Rhttps://joss.theoj.org/papers/10.21105/joss.06073.pdfCM++, connectivity, minimum cut, complex network analysis, graph, network, degree, clusteringtag:joss.theoj.org,2005:Paper/47282024-01-17T17:48:17Z2024-01-18T00:00:51Znetroles: A Java library for role equivalence analysis in networksacceptedv0.22023-08-31 16:13:57 UTC932024-01-17 17:48:17 UTC920245903JulianMüllerSocial Networks Lab, ETH Zürich, Switzerland, Institute of Computing, Università della Svizzera italiana, Switzerland0000-0001-6440-804610.21105/joss.05903https://doi.org/10.5281/zenodo.10070537Groovy, Javahttps://joss.theoj.org/papers/10.21105/joss.05903.pdfnetwork analysis, role analysistag:joss.theoj.org,2005:Paper/44392023-10-05T09:52:45Z2023-10-06T00:01:05ZNORDic: a Network-Oriented package for the Repurposing of Drugsacceptedv2.4.22023-04-18 11:32:05 UTC902023-10-05 09:52:45 UTC820235532ClémenceRédaUniversité Paris Cité, Neurodiderot, Inserm, F-75019 Paris, France0000-0003-3238-0258AndréeDelahaye-DuriezUniversité Paris Cité, Neurodiderot, Inserm, F-75019 Paris, France, Université Sorbonne Paris Nord, UFR de santé, médecine et biologie humaine, F-93000 Bobigny, France, Unité fonctionnelle de médecine génomique et génétique clinique, Hôpital Jean Verdier, AP-HP, F-93140 Bondy, France0000-0003-4324-737210.21105/joss.05532https://doi.org/10.5281/zenodo.8355529Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05532.pdfnetwork analysis, boolean network, network inference, biomarker identification, drug repurposingtag:joss.theoj.org,2005:Paper/41632023-08-04T17:14:02Z2023-08-05T00:01:33ZCNATool - Complex Network Analysis Toolaccepted2.0.42023-01-14 22:39:11 UTC882023-08-04 17:14:02 UTC820235373RobertoLuiz SouzaMonteiroSENAI CIMATEC University Center, Brasil \newline, Universidade do Estado da Bahia, Brasil \newline0000-0002-3931-5953RenataSouza Freitas DantasBarretoUniversidade do Estado da Bahia, Brasil \newline0000-0002-1607-4800AndréiaRitada SilvaUniversidade do Estado da Bahia, Brasil \newline0009-0009-0587-1263Alexandredo NascimentoSilvaUniversidade do Estado da Bahia, Brasil \newline, Universidade Estadual de Santa Cruz, Brasil \newline0000-0001-7436-8818JoséRoberto Araújode FontouraUniversidade do Estado da Bahia, Brasil \newline0000-0002-9703-835XMarcosBatistaFigueredoUniversidade do Estado da Bahia, Brasil \newline0000-0002-8193-5419HernaneBorges Barrosde PereiraSENAI CIMATEC University Center, Brasil \newline, Universidade do Estado da Bahia, Brasil \newline0000-0001-7476-926710.21105/joss.05373https://doi.org/10.5281/zenodo.8206265JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05373.pdfCNATool, complex network analysis, graph, network, degree, clustering, centrality, Pajektag:joss.theoj.org,2005:Paper/41652023-05-15T14:10:03Z2023-05-16T00:01:36Zfractopo: A Python package for fracture network analysisacceptedv0.5.22023-01-16 08:40:25 UTC852023-05-15 14:10:03 UTC820235300NikolasOvaskainenGeological Survey of Finland, University of Turku, Finland0000-0003-1562-028010.21105/joss.05300https://doi.org/10.5281/zenodo.7915808Nix, Python, Luahttps://joss.theoj.org/papers/10.21105/joss.05300.pdfgeology, structural geology, fracture network, GIStag:joss.theoj.org,2005:Paper/41542023-03-05T11:43:18Z2023-10-04T15:45:15ZMultilayerGraphs.jl: Multilayer Network Science in Juliaaccepted1.1.12023-01-07 16:18:32 UTC832023-03-05 11:43:18 UTC820235116ClaudioMoroniUniversity of Turin, Italy, Interdisciplinary Physics Team, Italy0000-0003-1274-6937PietroMonticoneUniversity of Turin, Italy, Interdisciplinary Physics Team, Italy0000-0002-2731-962310.21105/joss.05116https://doi.org/10.5281/zenodo.7697094Juliahttps://joss.theoj.org/papers/10.21105/joss.05116.pdfGraphs, Networks, Complexity, Complex-Networks, Complex-Systems, Network-Science, Network-Analysis, Multilayer-Graphs, Multilayer-Networkstag:joss.theoj.org,2005:Paper/39862023-01-27T10:04:07Z2023-01-28T00:01:23Zsignnet: An R package for analyzing signed networksacceptedv1.0.02022-11-04 11:59:40 UTC812023-01-27 10:04:07 UTC820234987DavidSchochGESIS - Leibniz Institute for the Social Sciences0000-0003-2952-481210.21105/joss.04987https://doi.org/10.5281/zenodo.7522563R, C++https://joss.theoj.org/papers/10.21105/joss.04987.pdfnetwork analysis, signed networks, structural balance theorytag:joss.theoj.org,2005:Paper/38452023-01-08T20:38:49Z2023-01-09T00:01:20ZIGraph/M: graph theory and network analysis for Mathematicaaccepted0.6.22022-08-30 10:02:13 UTC812023-01-08 20:38:49 UTC820234899SzabolcsHorvátMax Planck Institute for Cell Biology and Genetics, Dresden, Germany \newline, Center for Systems Biology Dresden, Dresden, Germany \newline0000-0002-3100-523XJakubPodkalickiIndependent Developer, Poland \newlineGáborCsárdiRStudio \newline0000-0001-7098-9676TamásNepuszIndependent Developer, Hungary \newline0000-0002-1451-338XVincentTraagCentre for Science and Technology Studies, Leiden University, Leiden, Netherlands \newline0000-0003-3170-3879FabioZaniniLowy Cancer Research Centre, University of New South Wales, Kensington, NSW, Australia \newline0000-0001-7097-8539DanielNoomIndependent Developer, Netherlands \newline10.21105/joss.04899https://doi.org/10.5281/zenodo.7469228Mathematica, M, C++, Chttps://joss.theoj.org/papers/10.21105/joss.04899.pdfWolfram Language, graph theory, network analysistag:joss.theoj.org,2005:Paper/34332022-12-15T20:02:32Z2022-12-16T00:01:07ZDIANNA: Deep Insight And Neural Network Analysisacceptedv.0.4.02022-03-22 16:05:29 UTC802022-12-15 20:02:32 UTC720224493ElenaRanguelovaNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-9834-1756ChristiaanMeijerNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-5529-5761LeonOostrumNetherlands eScience Center, Amsterdam, the Netherlands0000-0001-8724-8372YangLiuNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-1966-8460PatrickBosNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-6033-960XGiuliaCrocioniNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-0823-0121MatthieuLaneuvilleSURF, Amsterdam, the Netherlands0000-0001-6022-0046BryanCardenasGuevaraSURF, Amsterdam, the Netherlands0000-0001-9793-910XRenaBakhshiNetherlands eScience Center, Amsterdam, the Netherlands0000-0002-2932-3028DamianPodareanuSURF, Amsterdam, the Netherlands0000-0002-4207-872510.21105/joss.04493https://doi.org/10.5281/zenodo.7387004Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.04493.pdfexplainable AI, Deep Neural Networks, ONNX, benchmark datasetstag:joss.theoj.org,2005:Paper/39372022-12-13T13:38:32Z2022-12-14T00:01:24Zcosasi: Graph Diffusion Source Inference in Pythonaccepted0.0.12022-10-03 18:27:51 UTC802022-12-13 13:38:32 UTC720224894LucasH.McCabeDigital and Analytic Solutions, Logistics Management Institute, Department of Mathematics, The George Washington University0000-0002-7383-282310.21105/joss.04894https://doi.org/10.5281/zenodo.7430558Pythonhttps://joss.theoj.org/papers/10.21105/joss.04894.pdfnetwork science, graph algorithms, network analysis, epidemics, simulation, communication, information theory