tag:joss.theoj.org,2005:/papers/tagged/morphologiesJournal of Open Source Software2023-05-08T11:26:37ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42972023-05-08T11:26:37Z2023-05-09T00:01:22ZZoobot: Adaptable Deep Learning Models for Galaxy Morphologyacceptedv1.0.02023-03-09 23:12:38 UTC852023-05-08 11:26:37 UTC820235312MikeWalmsleyJodrell Bank Centre for Astrophysics, Department of Physics and Astronomy, University of Manchester, Manchester, UK0000-0002-6408-4181CampbellAllenZooniverse.org, University of Oxford, Oxford, UKBenAusselInstitut für Planetologie, Westfälische Wilhelms-Universität Münster, Münster, Germany0000-0003-2592-6806MicahBowlesJodrell Bank Centre for Astrophysics, Department of Physics and Astronomy, University of Manchester, Manchester, UK0000-0001-5838-8405KasiaGregorowiczAstronomical Observatory of the University of Warsaw, Warsaw, Poland0009-0003-0023-6240InigoValSlijepcevicJodrell Bank Centre for Astrophysics, Department of Physics and Astronomy, University of Manchester, Manchester, UK0000-0002-7056-9599ChrisJ.LintottOxford Astrophysics, Department of Physics, University of Oxford, Oxford, UK0000-0001-5578-359XAnnaM. m.ScaifeJodrell Bank Centre for Astrophysics, Department of Physics and Astronomy, University of Manchester, Manchester, UK, The Alan Turing Institute, London, UK0000-0002-5364-2301MajaJabłońskaAstronomical Observatory of the University of Warsaw, Warsaw, Poland0000-0001-6962-4979KosioKarchevTheoretical and Scientific Data Science Group, Scuola Internazionale Superiore di Studi Avanzati (SISSA), Trieste Italy0000-0001-9344-736XDeniseLanzieriUniversité Paris Cité, Université Paris-Saclay, CEA, CNRS, AIM, Gif-sur-Yvette, France0000-0003-2787-1634DevinaMohanJodrell Bank Centre for Astrophysics, Department of Physics and Astronomy, University of Manchester, Manchester, UK0000-0002-8566-7968DavidO’RyanDepartment of Physics, Lancaster University, Lancaster, UK0000-0003-1217-4617BharathSaiguhanPhysical Research Laboratory, Navrangpura, Ahmedabad, India0000-0001-7580-364XCriselSuárezVanderbilt University, Nashville, USA, Center for Astrophysics | Harvard & Smithsonian, Cambridge, USA0000-0001-5243-7659NicolásGuerra-VarasDipartimento di Fisica, Università di Roma "Tor Vergata", Roma, Italy, Department of Astronomy, Faculty of Mathematics, University of Belgrade, Belgrade, Serbia0000-0002-9718-6352RenukaVeluRuprecht Karl University of Heidelberg, Germany10.21105/joss.05312https://doi.org/10.5281/zenodo.7896025HCL, Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05312.pdfastronomy, deep learning, galaxy morphology, statistics, citizen sciencetag:joss.theoj.org,2005:Paper/36072023-01-27T19:40:20Z2023-01-28T00:01:31ZPyAutoGalaxy: Open-Source Multiwavelength Galaxy Structure & Morphologyaccepted2022.05.02.12022-05-17 09:14:18 UTC812023-01-27 19:40:20 UTC820234475James.W.NightingaleInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LE0000-0002-8987-7401AristeidisAmvrosiadisInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LE0000-0002-4465-1564RichardG.HayesInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LEQiuhanHeInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LE0000-0003-3672-9365AmyEtheringtonInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LEXiaoYueCaoNational Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, Beijing 100012, ChinaShaunColeInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LE0000-0002-5954-7903JonathanFrawleyAdvanced Research Computing, Durham University, Durham DH1 3LE0000-0002-9437-7399CarlosS.FrenkInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LE0000-0002-2338-716XSamLangeInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LERanLiNational Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, Beijing 100012, China0000-0003-3899-0612RichardJ.MasseyInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LE0000-0002-6085-3780MattiaNegrelloSchool of Physics and Astronomy, Cardiff University, The Parade, Cardiff CF24 3AA, UK0000-0002-7925-7663AndrewRobertsonInstitute for Computational Cosmology, Stockton Rd, Durham DH1 3LE0000-0002-0086-052410.21105/joss.04475https://doi.org/10.5281/zenodo.7546915Pythonhttps://joss.theoj.org/papers/10.21105/joss.04475.pdfastronomy, galaxy formation and evolution, galaxy morphology, interferometrytag:joss.theoj.org,2005:Paper/36852022-11-15T13:19:29Z2022-11-16T00:01:14ZNuclear Morphology Analysis 2.0.0: Improved image analysis software for measuring nuclear shapeacceptedv2.0.02022-06-28 10:03:31 UTC792022-11-15 13:19:29 UTC720224767BenjaminM.SkinnerSchool of Life Sciences, University of Essex, Colchester, United Kingdom0000-0002-7152-116710.21105/joss.04767https://doi.org/10.5281/zenodo.7303498ImageJ Macro, Javahttps://joss.theoj.org/papers/10.21105/joss.04767.pdfmorphometrics, sperm chromatin, nuclear organisationtag:joss.theoj.org,2005:Paper/16842020-08-03T14:35:41Z2021-02-15T11:30:39ZMorphoPy: A python package for feature extraction of neural morphologies.acceptedv0.62020-05-26 09:36:19 UTC522020-08-03 14:35:41 UTC520202339SophieLaturnusInstitute for Ophthalmic Research, University of Tübingen, Germany, Bernstein Center for Computational Neuroscience, University of Tübingen, Germany, Center for Integrative Neuroscience, University of Tübingen, Germany0000-0001-9532-788XAdamvon DaranyiCenter for Integrative Neuroscience, University of Tübingen, GermanyZiweiHuangInstitute for Ophthalmic Research, University of Tübingen, Germany, Bernstein Center for Computational Neuroscience, University of Tübingen, Germany, Center for Integrative Neuroscience, University of Tübingen, GermanyPhilippBerensInstitute for Ophthalmic Research, University of Tübingen, Germany, Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany, Bernstein Center for Computational Neuroscience, University of Tübingen, Germany, Center for Integrative Neuroscience, University of Tübingen, Germany0000-0002-0199-472710.21105/joss.02339https://doi.org/10.5281/zenodo.3956644Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.02339.pdfneurons, morphologies, anatomytag:joss.theoj.org,2005:Paper/15922020-07-13T19:28:06Z2021-02-15T11:30:51Zspam: Software for Practical Analysis of Materialsaccepted0.5.1.42020-05-20 12:03:15 UTC512020-07-13 19:28:06 UTC520202286OlgaStamatiUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0002-7492-2134EdwardAndòUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0001-5509-5287EmmanuelRoubinUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0002-5748-139XRémiCailletaudUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France, Univ. Grenoble Alpes, CNRS, INRAE, IRD, Météo France, OSUG, 38000 Grenoble, France0000-0002-1373-7031MaxWiebickeUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France, Institute of Geotechnical Engineering, Technische Universität Dresden, D-01062 Dresden, Germany0000-0001-9556-8579GustavoPinzonUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0002-6526-7393CyrilleCoutureUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0001-9073-3926RyanC.HurleyJohns Hopkins University, Baltimore, MD 21218, USA0000-0003-1652-635XRobertCaulkUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0001-5618-8629DenisCaillerieUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, FranceTakashiMatsushimaDepartment of Engineering Mechanics and Energy, University of Tsukuba, Tsukuba, Japan0000-0002-2553-7643PierreBésuelleUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0001-9586-4888FélixBertoniUniv. Grenoble Alpes, IUT2, 38000 Grenoble, FranceTomArnaudUniv. Grenoble Alpes, IUT2, 38000 Grenoble, FranceAlejandroOrtegaLaborinUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0001-9026-5288RiccardoRoratoUniversitat Politécnica de Catalunya (UPC), Barcelona (Spain) - Department of Civil and Environmental EngineeringYueSunUniv. Lille, CNRS, Centrale Lille, UMR 9013 - LaMcube - Laboratoire de Mécanique, Multiphysique, Multiéchelle, F-59000 Lille, France0000-0002-9154-282XAlessandroTengattiniUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France, Institut Laue-Langevin (ILL), Grenoble, France0000-0003-0320-3340OlumideOkubadejoUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, FranceJean-BaptisteColliatUniv. Lille, CNRS, Centrale Lille, UMR 9013 - LaMcube - Laboratoire de Mécanique, Multiphysique, Multiéchelle, F-59000 Lille, FranceMohammadSaadatfarAustralian National University, Canberra, AustraliaFernandoE.GarciaDivision of Engineering \& Applied Science, California Institute of Technology, Pasadena, CA 91125, USA0000-0001-7993-0347ChristosPapazoglouUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, FranceIlijaVegoUniv. Grenoble Alpes, CNRS, Grenoble INP, 3SR, F-38000 Grenoble, France0000-0003-4426-3382SébastienBrisardUniversité Gustave Eiffel, Laboratoire Navier, ENPC, IFSTTAR, CNRS UMR 8205, Marne-la-Vallée, F-77455, France0000-0002-1976-6263JelkeDijkstraDepartment of Architecture and Civil Engineering, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden0000-0003-3792-0727GeorgiosBirmpilisDepartment of Architecture and Civil Engineering, Chalmers University of Technology, SE-412 96 Gothenburg, Sweden0000-0002-8353-693X10.21105/joss.02286https://doi.org/10.5281/zenodo.3940302Pythonhttps://joss.theoj.org/papers/10.21105/joss.02286.pdfC/C++, material science, mechanics of materials, granular mechanics, digital image correlation, digital volume correlation, mesh projection, morphologytag:joss.theoj.org,2005:Paper/14632020-03-01T23:57:46Z2021-02-15T11:31:03Zpsi-collect: A Python module for post-storm image collection and catalogingacceptedv0.62020-02-03 13:17:10 UTC472020-03-01 23:57:46 UTC520202075MatthewC.MoretzDepartment of Computer Science, The University of North Carolina at GreensboroDanielFosterDepartment of Computer Science, The University of North Carolina at GreensboroJohnWeberDepartment of Computer Science, The University of North Carolina at GreensboroRintyChowdhuryDepartment of Computer Science, The University of North Carolina at GreensboroShahNafisRafiqueDepartment of Computer Science, The University of North Carolina at GreensboroEvanB.GoldsteinDepartment of Geography, Environment, and Sustainability, The University of North Carolina at Greensboro0000-0001-9358-1016SomyaD.MohantyDepartment of Computer Science, The University of North Carolina at Greensboro0000-0002-4253-520110.21105/joss.02075https://doi.org/10.5281/zenodo.3687347Python, GLSLhttps://joss.theoj.org/papers/10.21105/joss.02075.pdfcoastal, storm, morphology, hurricane, severe weather, NOAAtag:joss.theoj.org,2005:Paper/14022020-02-19T07:03:40Z2021-02-15T11:31:15ZDAFSA: a Python library for Deterministic Acyclic Finite State Automataacceptedv0.5.12019-12-12 12:26:18 UTC462020-02-19 07:03:40 UTC520201986TiagoTresoldiDepartment of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History0000-0002-2863-146710.21105/joss.01986https://doi.org/10.5281/zenodo.3668870Pythonhttps://joss.theoj.org/papers/10.21105/joss.01986.pdffinite state automata, deterministic acyclic finite state automaton, directed acyclic word graph, sequence analysis, morphologytag:joss.theoj.org,2005:Paper/13292019-12-20T11:23:16Z2021-02-15T11:31:22Zpybeach: A Python package for extracting the location of dune toes on beach profile transectsacceptedv0.1.12019-11-12 01:08:10 UTC442019-12-20 11:23:16 UTC420191890TomasBeuzenDepartment of Statistics, University of British Columbia, Vancouver, Canada0000-0003-2762-915110.21105/joss.01890https://doi.org/10.5281/zenodo.3579501Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.01890.pdfcoastal, morphology, dunes, machine learningtag:joss.theoj.org,2005:Paper/12832019-11-20T18:14:41Z2021-02-15T11:31:31Zmomepy: Urban Morphology Measuring Toolkitacceptedv0.12019-10-09 11:46:22 UTC432019-11-20 18:14:41 UTC420191807MartinFleischmannDepartment of Architecture, University of Strathclyde0000-0003-3319-336610.21105/joss.01807https://doi.org/10.5281/zenodo.3544609Pythonhttps://joss.theoj.org/papers/10.21105/joss.01807.pdfurban morphology, morphometrics, geospatial analysis, urban formtag:joss.theoj.org,2005:Paper/9202019-05-09T15:45:55Z2021-02-15T11:32:26ZUralicNLP: An NLP Library for Uralic Languagesacceptedv1.1.02019-03-09 07:31:55 UTC372019-05-09 15:45:55 UTC420191345MikaHämäläinenDepartment of Digital Humanities, University of Helsinki0000-0001-9315-127810.21105/joss.01345https://doi.org/10.5281/zenodo.2668061Pythonhttps://joss.theoj.org/papers/10.21105/joss.01345.pdfmorphology, syntax, semantics, constraint grammar, finite state morphology, Uralic languages, natural language processing, endangered languages