tag:joss.theoj.org,2005:/papers/tagged/model%20analysisJournal of Open Source Software2024-03-20T16:19:58ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/47592024-03-20T16:19:58Z2024-03-21T00:23:03ZPywaterflood: Well connectivity analysis through capacitance-resistance modelingacceptedv0.3.12023-09-16 18:42:32 UTC952024-03-20 16:19:58 UTC920246191FrankMalePennsylvania State University, University Park, PA, USA0000-0002-3402-557810.21105/joss.06191https://doi.org/10.5281/zenodo.10815882Python, Rusthttps://joss.theoj.org/papers/10.21105/joss.06191.pdfwell connectivity analysis, waterfloods, CO2 floods, Geothermal energy, multiphase flowtag:joss.theoj.org,2005:Paper/45872023-10-30T21:01:26Z2023-10-31T20:12:32ZUQTestFuns: A Python3 library of uncertainty quantification (UQ) test functionsacceptedv0.4.02023-07-07 17:24:02 UTC902023-10-30 21:01:26 UTC820235671DamarWicaksonoCenter for Advanced Systems Understanding (CASUS) - Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Germany0000-0001-8587-7730MichaelHechtCenter for Advanced Systems Understanding (CASUS) - Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Germany0000-0001-9214-825310.21105/joss.05671https://doi.org/10.5281/zenodo.10047512Pythonhttps://joss.theoj.org/papers/10.21105/joss.05671.pdftest functions, benchmark, uncertainty quantification, metamodeling, surrogate modeling, sensitivity analysis, reliability analysis, rare event estimationtag:joss.theoj.org,2005:Paper/44922023-08-02T13:44:30Z2023-08-03T09:05:58Zpymgpipe: microbiome metabolic modeling in Pythonacceptedv0.15.02023-05-18 18:05:37 UTC882023-08-02 13:44:30 UTC820235545YoliMeydanProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, United States of America.0009-0003-4597-3340FedericoBaldiniProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, United States of America.0000-0001-9079-8869TalKoremProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, United States of America., Department of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, United States of America.0000-0002-0609-085810.21105/joss.05545https://doi.org/10.5281/zenodo.8169484Jupyter Notebook, Python, JetBrains MPShttps://joss.theoj.org/papers/10.21105/joss.05545.pdfmetabolic modeling, flux balance analysis, microbial communities, microbiometag:joss.theoj.org,2005:Paper/42252023-07-31T22:44:21Z2023-08-01T00:01:14ZViMag: A Visual Vibration Analysis Toolboxacceptedv0.1.62023-02-21 08:49:46 UTC872023-07-31 22:44:21 UTC820235491RicardLado-RoigéIQS School of Engineering, Universitat Ramon Llull, Via Augusta 390, 08017 Barcelona, Spain0000-0002-6421-7351MarcoA.PérezIQS School of Engineering, Universitat Ramon Llull, Via Augusta 390, 08017 Barcelona, Spain0000-0003-4140-182310.21105/joss.05491https://doi.org/10.5281/zenodo.8199675JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05491.pdfdeep-learning, modal analysis, condition monitoring, structural health monitoring, motion magnificationtag:joss.theoj.org,2005:Paper/42632023-05-24T17:44:29Z2023-05-25T00:01:34Zosiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Modelacceptedv1.0.02023-02-24 22:59:49 UTC852023-05-24 17:44:29 UTC820235226HamzaAhsanJoint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA0000-0003-1631-1789ZarrarKhanJoint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA0000-0002-8147-8553AbigailSnyderJoint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA0000-0002-9034-9948PageKyleJoint Global Change Research Institute, Pacific Northwest National Laboratory, College Park, MD, USA0000-0002-1257-8358ChrisVernonPacific Northwest National Laboratory, Richland, WA, USA0000-0002-3406-621410.21105/joss.05226https://doi.org/10.5281/zenodo.7938714Rhttps://joss.theoj.org/papers/10.21105/joss.05226.pdfclimate change, agriculture, GCAMtag:joss.theoj.org,2005:Paper/39322023-04-19T13:58:06Z2023-04-20T00:02:53Zelapid: Species distribution modeling tools for Pythonacceptedv0.3.142022-10-01 07:11:52 UTC842023-04-19 13:58:06 UTC820234930ChristopherB.AndersonEarth Observation Lab, Planet Labs PBC, San Francisco, CA, USA, Center for Conservation Biology, Stanford University, Stanford, CA, USA0000-0001-7392-436810.21105/joss.04930https://doi.org/10.5281/zenodo.7813017Pythonhttps://joss.theoj.org/papers/10.21105/joss.04930.pdfbiogeography, species distribution modeling, gesopatial analysis, machine learningtag:joss.theoj.org,2005:Paper/39292023-03-07T15:19:21Z2023-03-08T00:04:22ZHydroMT: Automated and reproducible model building and analysisacceptedv0.5.02022-09-28 08:56:15 UTC832023-03-07 15:19:21 UTC820234897DirkEilanderDeltares, The Netherlands, Institution for Environmental Studies (IVM), Vrije Universiteit Amsterdam, The Netherlands0000-0002-0951-8418HélèneBoisgontierDeltares, The NetherlandsLaurèneJ. e.BouazizDeltares, The Netherlands0000-0003-0597-8051JoostBuitinkDeltares, The NetherlandsAnaïsCouasnonDeltares, The Netherlands, Institution for Environmental Studies (IVM), Vrije Universiteit Amsterdam, The Netherlands0000-0001-9372-841XBrendanDalmijnDeltares, The NetherlandsMarkHegnauerDeltares, The NetherlandsTjallingde JongDeltares, The NetherlandsSibrenLoosDeltares, The NetherlandsIndraMarthDeltares, The NetherlandsWillemvan VerseveldDeltares, The Netherlands0000-0003-3311-738X10.21105/joss.04897https://doi.org/10.5281/zenodo.7663065Pythonhttps://joss.theoj.org/papers/10.21105/joss.04897.pdfreproducible model building, model analysis, hydrology, hydrodynamics, gistag:joss.theoj.org,2005:Paper/36532023-02-21T15:19:54Z2023-02-22T00:00:52ZdsBinVal: Conducting distributed ROC analysis using DataSHIELDacceptedv1.0.12022-06-13 12:52:25 UTC822023-02-21 15:19:54 UTC820234545DanielSchalkDepartment of Statistics, LMU Munich, Munich, Germany, DIFUTURE (DataIntegration for Future Medicine, www.difuture.de), LMU Munich, Munich, Germany, Munich Center for Machine Learning, Munich, Germany0000-0003-0950-1947VerenaSophiaHoffmannInstitute for Medical Information Processing, Biometry and Epidemiology, LMU Munich, Munich, Germany, DIFUTURE (DataIntegration for Future Medicine, www.difuture.de), LMU Munich, Munich, GermanyBerndBischlDepartment of Statistics, LMU Munich, Munich, Germany, Munich Center for Machine Learning, Munich, GermanyUlrichMansmannInstitute for Medical Information Processing, Biometry and Epidemiology, LMU Munich, Munich, Germany, DIFUTURE (DataIntegration for Future Medicine, www.difuture.de), LMU Munich, Munich, Germany10.21105/joss.04545https://doi.org/10.5281/zenodo.7634619Rhttps://joss.theoj.org/papers/10.21105/joss.04545.pdfDataSHIELD, distributed computing, distributed analysis, privacy-preserving, diagnostic tests, prognostic model, model validation, ROC-GLM, discrimination, calibration, Brier scoretag:joss.theoj.org,2005:Paper/36302022-11-25T07:51:09Z2022-12-01T15:37:03ZTLViz: Visualising and analysing tensor decomposition models with Pythonacceptedv0.1.12022-05-26 07:53:29 UTC792022-11-25 07:51:09 UTC720224754MarieRoaldSimula Metropolitan Center for Digital Engineering, Norway, Oslo Metropolitan University, Norway0000-0002-9571-8829YngveMardalMoeIndependent Researcher, Norway0000-0002-5159-901210.21105/joss.04754https://doi.org/10.5281/zenodo.7274925Pythonhttps://joss.theoj.org/papers/10.21105/joss.04754.pdftensor decompositions, data mining, data visualisation, TensorLytag:joss.theoj.org,2005:Paper/36202022-10-09T08:17:18Z2022-10-10T00:01:33ZPyMSM: Python package for Competing Risks and Multi-State models for Survival Dataacceptedv0.1.72022-05-23 16:51:40 UTC782022-10-09 08:17:18 UTC720224566HagaiRossmanDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel, Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel0000-0002-5613-8004AyyaKeshetDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel, Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel0000-0002-1841-7918MalkaGorfineDepartment of Statistics and Operations Research, Tel Aviv University, Tel Aviv, Israel0000-0002-1577-662410.21105/joss.04566https://doi.org/10.5281/zenodo.7140849Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.04566.pdfmultistate models, survival analysis, competing risks