JOSS Papers: microbiology

All Papers
3111
 Published Papers
2782
 Active Papers
329
published Published 3 months ago

primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other

Python
@dr-joe-wirth
10.21105/joss.06850
published Published 3 months ago

AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration assays

Python
@agerada
10.21105/joss.06826
published Published 11 months ago

Dnaapler: A tool to reorient circular microbial genomes

Just Python
@gbouras13
10.21105/joss.05968
published Published about 2 years ago

Corekaburra: pan-genome post-processing using core gene synteny

Python
@milnus
10.21105/joss.04910
published Published over 2 years ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Python
@milnus
10.21105/joss.04369
published Published over 3 years ago

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines

R
@pschloss
10.21105/joss.03073
published Published almost 5 years ago

ReferenceSeeker: rapid determination of appropriate reference genomes

Python
@oschwengers
10.21105/joss.01994
published Published over 5 years ago

phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects

R M4 C++
@schuyler-smith
10.21105/joss.01442
Displaying 8 papers

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ISSN 2475-9066