JOSS Papers: metagenomics

Published Papers

published Published over 2 years ago

MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis

R

@adrientaudiere

10.21105/joss.06038

published Published almost 3 years ago

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation

10.21105/joss.05627

published Published about 3 years ago

MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis

wdl Jupyter Notebook Python

10.21105/joss.04851

published Published over 3 years ago

Metagenomic classification with KrakenUniq on low-memory computers

Perl

10.21105/joss.04908

published Published almost 4 years ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python

10.21105/joss.04360

published Published over 4 years ago

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets

Python Jupyter Notebook

10.21105/joss.03678

published Published about 5 years ago

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

Perl Python Prolog

10.21105/joss.02334

published Published over 5 years ago

EUKulele: Taxonomic annotation of the unsung eukaryotic microbes

Python

10.21105/joss.02817

published Published almost 6 years ago

LTRpred: de novo annotation of intact retrotransposons

R UnrealScript

10.21105/joss.02170

published Published over 6 years ago

Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification

Python

10.21105/joss.01540

Displaying papers 11 - 20 of 22 in total

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