tag:joss.theoj.org,2005:/papers/tagged/megJournal of Open Source Software2024-03-17T15:00:35ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/50042024-03-17T15:00:35Z2024-03-18T07:46:38ZSelfEEG: A Python library for Self-Supervised Learning in Electroencephalographyacceptedv0.1.02023-12-16 00:30:46 UTC952024-03-17 15:00:35 UTC920246224FedericoDel PupDepartment of Information Engineering, University of Padova, Padova, Italy, Department of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy0009-0004-0698-962XAndreaZanolaPadova Neuroscience Center, University of Padova, Padova, Italy0000-0001-6973-8634Louis FabriceTshimangaDepartment of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy0009-0002-1240-4830Paolo EmilioMazzonPadova Neuroscience Center, University of Padova, Padova, ItalyManfredoAtzoriDepartment of Neuroscience, University of Padova, Padova, Italy, Padova Neuroscience Center, University of Padova, Padova, Italy, Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland0000-0001-5397-206310.21105/joss.06224https://doi.org/10.5281/zenodo.10813095Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.06224.pdfPyTorch, Deep Learning (DL), Self-Supervised Learning (SSL), Contrastive Learning (CL), Electroencephalography (EEG), Biomedical signalstag:joss.theoj.org,2005:Paper/43002024-02-21T08:51:15Z2024-02-23T09:04:14ZReducing the efforts to create reproducible analysis code with FieldTripacceptedhttps://github.com/fieldtrip/fieldtrip/commit/9cfc0a7e7b7871a1d9938552ce60041c59f3a5532023-03-10 17:12:47 UTC942024-02-21 08:51:15 UTC920245566MatsW.j.van EsDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, Oxford Centre for Human Brain Activity, Department of Psychiatry, University of Oxford, United Kingdom, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, United Kingdom0000-0002-7133-509XEelkeSpaakDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0002-2018-3364Jan-MathijsSchoffelenDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands0000-0003-0923-6610RobertOostenveldDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, NatMEG, Karolinska Institutet, Stockholm, Sweden0000-0002-1974-129310.21105/joss.05566https://doi.org/10.5281/zenodo.10495308MATLAB, Mathematicahttps://joss.theoj.org/papers/10.21105/joss.05566.pdfFieldTrip Toolbox, reproducibility, analysis pipeline, open science, MEG, EEGtag:joss.theoj.org,2005:Paper/47162023-12-15T17:51:50Z2023-12-16T20:57:44ZHNN-core: A Python software for cellular and circuit-level interpretation of human MEG/EEGaccepted0.32023-08-23 18:15:30 UTC922023-12-15 17:51:50 UTC820235848MainakJasAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA0000-0002-3199-9027RyanThorpeDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0003-2491-8599NicholasTolleyDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0003-0358-0074ChristopherBaileyDepartment of Clinical Medicine, Aarhus University, Aarhus, Denmark0000-0003-3318-3344StevenBrandtDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USABlakeCaldwellBassett Medical Center, Cooperstown, NY, USA0000-0002-6882-6998HuziChengDepartment of Psychological and Brain Sciences, Indiana University Bloomington, Bloomington, IN, USADylanDanielsRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0009-0008-1958-353XCarolinaFernandezPujolDepartment of Biomedical Engineering, University of Miami, Coral Gables, FL, USA0009-0003-0611-1270MostafaKhalilDepartment of Psychiatry and Behavioral Health, Penn State Milton S. Hershey Medical Center, Penn State College of Medicine, Hershey, PA, USASamikaKanekarWarren Alpert Medical, Brown University, Providence, RI0000-0002-6111-4461CarmenKohlRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0001-7585-595XOrsolyaKolozsváriDepartment of Psychology, University of Jyväskylä, Jyväskylä, Finland, Jyväskylä Centre for Interdisciplinary Brain Research, University of Jyväskylä, Jyväskylä, Finland0000-0002-1619-6314KaisuLankinenAthinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA, Department of Radiology, Harvard Medical School, Boston, MA, USA0000-0003-2210-2385KennethLoiRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA, Department of Molecular and Cell Biology; Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA, USASamNeymotinCenter for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA, Department of Psychiatry, New York University Grossman School of Medicine, New York, NY, USA0000-0003-3646-5195RajatPartaniDepartment of Computer Science and Engineering, National Institute of Technology Karnataka, Karnataka, India0000-0002-6863-7046MattanPelahRobert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA, Florida State University, Tallahassee, FL, USAAlexRockhillDepartment of Human Physiology, University of Oregon, Eugene, OR, USA0000-0003-3868-7453MohamedSherifDepartment of Psychiatry and Human Behavior, Brown University, Providence, RI, USA, Rhode Island Hospital, Providence, RI, USA0000-0002-8951-1645MattiHamalainenDepartment of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland0000-0001-6841-112XStephanieJonesDepartment of Neuroscience, Brown University, Providence, RI, USA, Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, RI, USA0000-0001-6760-530110.21105/joss.05848https://doi.org/10.5281/zenodo.10289164Python, Jupyter Notebook, AMPLhttps://joss.theoj.org/papers/10.21105/joss.05848.pdfneuroscience, EEG, MEG, modeling, neocortextag:joss.theoj.org,2005:Paper/42652023-10-23T09:57:37Z2023-10-24T00:01:08ZReSurfEMG: A Python library for preprocessing and analysis of respiratory EMG.acceptedv0.0.82023-02-27 13:01:49 UTC902023-10-23 09:57:37 UTC820235251CandaceMakedaMooreNetherlands eScience Center, Amsterdam, The Netherlands0000-0003-1672-7565WalterBaccinelliNetherlands eScience Center, Amsterdam, The Netherlands0000-0001-8888-4792OlegSivokonBright Computing / NVIDIA, Amsterdam, The NetherlandsRobertusSimon PetrusWarnaarCardiovascular and Respiratory Physiology Group, Technical Medical Centre, University of Twente, Enschede, the Netherlands.0000-0001-9443-4069ElineOppersmaCardiovascular and Respiratory Physiology Group, Technical Medical Centre, University of Twente, Enschede, the Netherlands.0000-0002-0150-306X10.21105/joss.05251https://doi.org/10.5281/zenodo.8429265Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05251.pdfPython, respiratory surface EMG, respiratory EMG, signal processingtag:joss.theoj.org,2005:Paper/40972023-04-05T14:27:49Z2023-04-06T00:03:27ZOpenseize: A digital signal processing package for large EEG datasets in Pythonacceptedv1.0.02022-12-20 15:34:56 UTC842023-04-05 14:27:49 UTC820235126MatthewS.CaudillDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, United States of America, Jan and Dan Duncan Neurological Research Institute at Texas Childrens Hospital, Houston, TX, United States of America0000-0002-3656-926110.21105/joss.05126https://doi.org/10.5281/zenodo.7760376Pythonhttps://joss.theoj.org/papers/10.21105/joss.05126.pdfEEG, neuroscience, signal processing, local field potentials, time series analysistag:joss.theoj.org,2005:Paper/30732022-11-11T11:25:25Z2022-11-14T13:35:42ZFrites: A Python package for functional connectivity analysis and group-level statistics of neurophysiological dataacceptedv0.4.02021-09-21 12:11:23 UTC792022-11-11 11:25:25 UTC720223842EtienneCombrissonInstitut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France0000-0002-7362-3247RuggeroBasanisiInstitut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France0000-0003-4776-596XViniciusLimaCordeiroInstitut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France, Institut de Neurosciences des Systèmes, Aix-Marseille Université, UMR 1106 Inserm, 13005, Marseille, France0000-0001-7115-9041RobinA.aInceInstitute of Neuroscience and Psychology, University of Glasgow, Glasgow, UK0000-0001-8427-0507AndreaBrovelliInstitut de Neurosciences de la Timone, Aix Marseille Université, UMR 7289 CNRS, 13005, Marseille, France0000-0002-5342-133010.21105/joss.03842https://doi.org/10.5281/zenodo.7278278Pythonhttps://joss.theoj.org/papers/10.21105/joss.03842.pdfpython, cognitive neuroscience, computational neuroscience, neuroinformatics, neurophysiology, information theory, information-based measures, statistics, functional connectivity, fixed-effect ffx, random-effect rfx, cluster-based statistics, MEG EEG sEEG LFPs, Granger causalitytag:joss.theoj.org,2005:Paper/36572022-10-13T14:56:15Z2022-10-14T00:00:26ZPycrostates: a Python library to study EEG microstatesaccepted0.1.12022-06-14 15:36:12 UTC782022-10-13 14:56:15 UTC720224564VictorFératFunctional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland0000-0003-1952-7657MathieuScheltienneHuman Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland0000-0001-8316-7436DenisBrunetFunctional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland, Centre for Biomedical Imaging (CIBM) Lausanne-Geneva, Geneva, SwitzerlandTomasRosFunctional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland, Centre for Biomedical Imaging (CIBM) Lausanne-Geneva, Geneva, Switzerland0000-0001-6952-0459ChristophMichelFunctional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland, Centre for Biomedical Imaging (CIBM) Lausanne-Geneva, Geneva, Switzerland0000-0003-3426-573910.21105/joss.04564https://doi.org/10.5281/zenodo.7129852Python, Jinjahttps://joss.theoj.org/papers/10.21105/joss.04564.pdfneuroscience, neuroimaging, EEG, microstates, braintag:joss.theoj.org,2005:Paper/37292022-10-10T13:34:23Z2022-10-11T00:00:28ZMNELAB: a graphical user interface for MNE-Pythonacceptedv0.8.42022-07-19 18:10:27 UTC782022-10-10 13:34:23 UTC720224650ClemensBrunnerInstitute of Psychology, Educational Neuroscience, University of Graz, Austria0000-0002-6030-223310.21105/joss.04650https://doi.org/10.5281/zenodo.7162311Pythonhttps://joss.theoj.org/papers/10.21105/joss.04650.pdfpython, eeg, meg, mne, guitag:joss.theoj.org,2005:Paper/36272022-08-26T09:50:38Z2022-08-27T00:01:16ZMNE-ICALabel: Automatically annotating ICA components with ICLabel in Pythonacceptedv0.12022-05-24 18:28:24 UTC762022-08-26 09:50:38 UTC720224484AdamLiDepartment of Computer Science, Columbia University, New York, United States0000-0001-8421-365XJacobFeitelbergDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, United States0000-0002-4551-0245AnandPrakashSainiHuman Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland0000-0003-3595-5969RichardHöchenbergerInstitute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany0000-0002-0380-4798MathieuScheltienneHuman Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland, Institute of Bioengineering, Center for Neuroprosthetics, EPFL, Geneva, Switzerland, Department of Radiology and Medical Informatics, University of Geneva (UNIGE), Geneva, Switzerland0000-0001-8316-743610.21105/joss.04484https://doi.org/10.5281/zenodo.7017165Pythonhttps://joss.theoj.org/papers/10.21105/joss.04484.pdfMNE, MEG, EEG, iEEG, ICA, EEGLabtag:joss.theoj.org,2005:Paper/33042022-04-12T17:34:06Z2022-04-13T00:01:15Zpyemgpipeline: A Python package for electromyography processingacceptedv0.1.02022-01-24 17:23:54 UTC722022-04-12 17:34:06 UTC720224156Tsung-LinWuNanyang Technological University, School of Mechanical & Aerospace Engineering0000-0002-1823-6818AmrA.AlhossaryNanyang Technological University, Rehabilitation Research Institute of Singapore0000-0002-4470-5817ToddC.PatakyKyoto University, Department of Human Health Sciences0000-0002-8292-7189WeiTechAngNanyang Technological University, School of Mechanical & Aerospace Engineering, Nanyang Technological University, Rehabilitation Research Institute of Singapore0000-0002-5778-7719CyrilJ.DonnellyNanyang Technological University, Rehabilitation Research Institute of Singapore0000-0003-2443-521210.21105/joss.04156https://doi.org/10.5281/zenodo.6422544Pythonhttps://joss.theoj.org/papers/10.21105/joss.04156.pdfelectromyography, EMG processing