tag:joss.theoj.org,2005:/papers/tagged/labellingJournal of Open Source Software2023-05-08T13:22:38ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/41752023-05-08T13:22:38Z2023-05-17T09:12:44ZLaMa: a thematic labelling web applicationacceptedv1.0.02023-01-23 10:24:35 UTC852023-05-08 13:22:38 UTC820235135VictoriaBogachenkovaSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsEduardoCostaMartinsSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsJarlJansenSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsAna-MariaOlteniceanuSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsBartjanHenkemansSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsChinnoLavinSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsLinhNguyenMcGill University, Montreal, CanadaTheaBradleySoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsVeerleFürstSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The NetherlandsHossainMuhammadMuctadirSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0002-2090-4766Markvan den BrandSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0003-3529-6182LoekCleophasSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0002-7221-3676AlexanderSerebrenikSoftware Engineering and Technology cluster, Eindhoven University of Technology, Eindhoven, The Netherlands0000-0002-1418-009510.21105/joss.05135https://doi.org/10.5281/zenodo.7866236Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05135.pdfLabelling, Qualitative data analysis, Thematic analysistag:joss.theoj.org,2005:Paper/39192023-04-22T14:43:24Z2023-04-23T13:30:52ZLinopy: Linear optimization with n-dimensional labeled variablesacceptedv0.0.112022-09-23 08:19:50 UTC842023-04-22 14:43:24 UTC820234823FabianHofmannDepartment of Digital Transformation in Energy Systems, Technical University of Berlin0000-0002-6604-545010.21105/joss.04823https://doi.org/10.5281/zenodo.7751989Python, Jupyter Notebook, Juliahttps://joss.theoj.org/papers/10.21105/joss.04823.pdfpython, linear optimizationtag:joss.theoj.org,2005:Paper/34632022-08-05T18:36:00Z2022-08-06T02:57:34ZOpen-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7Tacceptedv0.32022-04-11 01:36:26 UTC762022-08-05 18:36:00 UTC720224368JerynChangSchool of Biomedical Sciences, The University of Queensland0000-0002-6659-365XFrederikSteynSchool of Biomedical Sciences, The University of Queensland, Department of Neurology, Royal Brisbane and Women's Hospital, Australia, Wesley Medical Research, The Wesley Hospital, UQ Centre for Clinical Research, The University of Queensland0000-0002-4782-3608ShyuanNgoDepartment of Neurology, Royal Brisbane and Women's Hospital, Australia, Wesley Medical Research, The Wesley Hospital, UQ Centre for Clinical Research, The University of Queensland, Australian Institute of Bioengineering and Nanotechnology, The University of Queensland0000-0002-1388-2108RobertHendersonDepartment of Neurology, Royal Brisbane and Women's Hospital, Australia, Wesley Medical Research, The Wesley Hospital, UQ Centre for Clinical Research, The University of Queensland0000-0002-2820-8183ChristineGuoActiGraph, LLC, Pensacola, FL, USASteffenBollmannCentre for Advanced Imaging, The University of Queensland, School of Information Technology and Electrical Engineering, The University of Queensland0000-0002-2909-0906JurgenFrippCSIRO Health and Biosecurity, The Australian eHealth Research Centre, Brisbane, Australia0000-0001-9705-0079MarkusBarthCentre for Advanced Imaging, The University of Queensland, School of Information Technology and Electrical Engineering, The University of Queensland0000-0002-0520-1843ThomasShawDepartment of Neurology, Royal Brisbane and Women's Hospital, Australia, Centre for Advanced Imaging, The University of Queensland, School of Information Technology and Electrical Engineering, The University of Queensland0000-0003-2490-053210.21105/joss.04368https://doi.org/10.5281/zenodo.6874987Pythonhttps://joss.theoj.org/papers/10.21105/joss.04368.pdfDocker, Apptainer, ANTs, MRI, Segmentation, Multi-atlas label fusiontag:joss.theoj.org,2005:Paper/25672022-03-19T20:48:18Z2022-03-20T00:00:36ZThe Babelizer: language interoperability for model coupling in the geosciencesacceptedv1.0.02021-04-09 19:12:17 UTC712022-03-19 20:48:18 UTC720223344EricW.h.HuttonCommunity Surface Dynamics Modeling System, University of Colorado Boulder0000-0002-5864-6459MarkD.PiperCommunity Surface Dynamics Modeling System, University of Colorado Boulder0000-0001-6418-277XGregoryE.TuckerCommunity Surface Dynamics Modeling System, University of Colorado Boulder, Cooperative Institute for Research in Environmental Sciences (CIRES), University of Colorado Boulder, Department of Geological Sciences, University of Colorado Boulder0000-0003-0364-580010.21105/joss.03344https://doi.org/10.5281/zenodo.6329737Python, Cython, Fortran, Chttps://joss.theoj.org/papers/10.21105/joss.03344.pdfC++, geosciences, modeling, interfacetag:joss.theoj.org,2005:Paper/29992021-10-19T10:54:39Z2022-01-18T12:10:02ZAuDoLab: Automatic document labelling and classification for extremely unbalanced dataacceptedv1.0.72021-08-27 10:20:38 UTC662021-10-19 10:54:39 UTC620213719ArneTillmannGeorg-August-Universität Göttingen, Göttingen, GermanyAntonThielmannGeorg-August-Universität Göttingen, Göttingen, GermanyGillianKantGeorg-August-Universität Göttingen, Göttingen, GermanyChristophWeisserGeorg-August-Universität Göttingen, Göttingen, Germany, Campus-Institut Data Science (CIDAS), Göttingen, GermanyBenjaminSäfkenGeorg-August-Universität Göttingen, Göttingen, Germany, Campus-Institut Data Science (CIDAS), Göttingen, GermanyAlexanderSilbersdorffGeorg-August-Universität Göttingen, Göttingen, Germany, Campus-Institut Data Science (CIDAS), Göttingen, GermanyThomasKneibGeorg-August-Universität Göttingen, Göttingen, Germany, Campus-Institut Data Science (CIDAS), Göttingen, Germany10.21105/joss.03719https://doi.org/10.5281/zenodo.5575835Python, PowerShellhttps://joss.theoj.org/papers/10.21105/joss.03719.pdfOne-class SVM, Unsupervised Document Classification, One-class Document Classification, LDA Topic Modelling, Out-of-domain Training Datatag:joss.theoj.org,2005:Paper/29312021-09-03T20:32:09Z2021-09-09T12:32:27ZAstronomicAL: an interactive dashboard for visualisation, integration and classification of data with Active Learningacceptedv1.0.02021-08-06 12:28:04 UTC652021-09-03 20:32:09 UTC620213635GrantStevensDepartment of Computer Science, Merchant Venturers Building, University of Bristol, Woodland Road, Bristol, BS8 1UB0000-0002-8885-4443SotiriaFotopoulouSchool of Physics, HH Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol, BS8 1TL0000-0002-9686-254XMalcolmN.BremerSchool of Physics, HH Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol, BS8 1TLOliverRayDepartment of Computer Science, Merchant Venturers Building, University of Bristol, Woodland Road, Bristol, BS8 1UB10.21105/joss.03635https://doi.org/10.5281/zenodo.5396671Pythonhttps://joss.theoj.org/papers/10.21105/joss.03635.pdfastronomy, machine learning, active learning, labelling, classification, softwaretag:joss.theoj.org,2005:Paper/8472019-02-24T18:13:15Z2021-02-15T11:32:33ZAtlasReader: A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI imagesacceptedv0.0.32019-02-05 11:27:05 UTC342019-02-24 18:13:15 UTC420191257MichaelPhilippNotterThe Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland0000-0002-5866-047XDanGaleCentre for Neuroscience Studies, Queen's University, Kingston, Canada0000-0002-9082-1659PeerHerholzLaboratory for Multimodal Neuroimaging, Philipps-University Marburg, Hesse, Germany, International Laboratory for Brain, Music and Sound Research, Université de Montréal & McGill University, Montréal, Canada, McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada0000-0002-9840-6257RossMarkelloMcConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada0000-0003-1057-1336Marie-LaureNotter-BielserCentre Leenaards de la Mémoire, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland0000-0001-5507-4304KirstieWhitakerAlan Turing Institute, London, UK; Department of Psychiatry, University of Cambridge, Cambridge, UK0000-0001-8498-405910.21105/joss.01257https://doi.org/10.5281/zenodo.2575731Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01257.pdfneuroimaging, neuroscience, visualization, atlas, results investigationtag:joss.theoj.org,2005:Paper/4282018-05-21T20:37:12Z2021-02-15T11:33:34ZHSImage: A Python and C++ library to allow interaction with ENVI-BIL hyperspectral imagesacceptedv1.2.02018-03-06 18:53:44 UTC252018-05-21 20:37:12 UTC32018630RyanC.BrownVirginia Tech0000-0002-3832-775XJoshuaMoserVirginia Tech10.21105/joss.00630https://doi.org/10.5281/zenodo.1250506Python, QMakehttps://joss.theoj.org/papers/10.21105/joss.00630.pdfHyperspectral, Camera, ENVI, Classified, Labeled, Image