JOSS Papers: kmer

Published Papers

published Published over 1 year ago

Back to sequences: Find the origin of k-mers

Python Rust

@pierrepeterlongo

10.21105/joss.07066

published Published almost 2 years ago

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets

Python Nix C

10.21105/joss.06830

published Published over 3 years ago

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

M4 C

10.21105/joss.04363

published Published about 4 years ago

ROCK: digital normalization of whole genome sequencing data

M4 C++

10.21105/joss.03790

published Published over 8 years ago

reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome

Perl R

10.21105/joss.00527

published Published almost 9 years ago

khmer release v2.1: software for biological sequence analysis

Python C++ Roff

10.21105/joss.00272

published Published over 9 years ago

sourmash: a library for MinHash sketching of DNA

Rust Python C++

10.21105/joss.00027

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