tag:joss.theoj.org,2005:/papers/tagged/integrationJournal of Open Source Software2024-03-05T10:10:26ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44002024-03-05T10:10:26Z2024-03-06T00:00:49ZWorldDynamics.jl: A Julia Package for Developing and Simulating Integrated Assessment Modelsacceptedv0.4.22023-04-13 20:15:11 UTC952024-03-05 10:10:26 UTC920245772PierluigiCrescenziGran Sasso Science Institute, L’Aquila, Italy, COATI, INRIA d’Université Côte d’Azur, Sophia Antipolis, France0000-0001-8789-3195EmanueleNataleCOATI, INRIA d’Université Côte d’Azur, Sophia Antipolis, France0000-0002-8755-3892AuroraRossiCOATI, INRIA d’Université Côte d’Azur, Sophia Antipolis, France0009-0001-3302-0468PauloBrunoSerafimGran Sasso Science Institute, L’Aquila, Italy0000-0002-5980-814910.21105/joss.05772https://doi.org/10.5281/zenodo.10684579Juliahttps://joss.theoj.org/papers/10.21105/joss.05772.pdfIntegrated Assessment Model, Modeling and Simulation, Scientific Computingtag:joss.theoj.org,2005:Paper/37392023-11-16T17:02:35Z2023-11-17T06:18:04ZMotorcycle: A spectral boundary-integral method for seismic cycles on multiple faultsacceptedv1.0.02022-07-22 15:52:11 UTC912023-11-16 17:02:35 UTC820235097SylvainBarbotUniversity of Southern California0000-0003-4257-740910.21105/joss.05097https://doi.org/10.5281/zenodo.10129331Fortran, MATLABhttps://joss.theoj.org/papers/10.21105/joss.05097.pdffault dynamics, friction, geophysics, Fortran90tag:joss.theoj.org,2005:Paper/46212023-11-03T12:44:49Z2023-11-04T00:00:43ZModeCouplingTheory.jl: A solver for mode-coupling-theory-like integro-differential equationsaccepted0.8.02023-07-24 09:19:10 UTC912023-11-03 12:44:49 UTC820235737IlianPihlajamaaSoft Matter and Biological Physics, Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, Netherlands0000-0003-3779-4281CorentinC.l.LaudicinaSoft Matter and Biological Physics, Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, Netherlands0009-0000-1888-2417ThomasVoigtmannInstitut für Materialphysik im Weltraum, Deutsches Zentrum für Luft- und Raumfahrt (DLR), Köln, 51170, Germany, Heinrich Heine University, Universitätsstraße 1, Düsseldorf, 40225, Germany0000-0002-1261-9295LiesbethM.c.JanssenSoft Matter and Biological Physics, Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, Netherlands0000-0001-5283-133010.21105/joss.05737https://doi.org/10.5281/zenodo.10036791Juliahttps://joss.theoj.org/papers/10.21105/joss.05737.pdfjulia, python, dynamics, glasses, liquids, integral equations, differential equationstag:joss.theoj.org,2005:Paper/42782023-10-10T17:00:25Z2023-10-11T00:01:01ZSwiftest: An \textit{N}-body Integrator for Gravitational Systemsacceptedv1.0.02023-03-04 17:59:58 UTC902023-10-10 17:00:25 UTC820235409CarlisleWishardDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA, Evansville Museum of Arts, History & Science, USA0009-0001-0733-3268JenniferPouplinDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA, Department of Physics and Astronomy, Purdue University, USAJacobElliottDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USADanaSinghSAIC, Princeton, NJ, USAKaustubAnandDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA, School of Aeronautics and Astronautics, Purdue University, USADavidMintonDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, USA0000-0003-1656-970410.21105/joss.05409https://doi.org/10.5281/zenodo.8417148Fortran, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05409.pdfAstronomy, Dynamics, N-body, Planetary Systemstag:joss.theoj.org,2005:Paper/45342023-10-03T20:07:24Z2023-10-04T00:00:41ZELK: A python package for correcting, analyzing, and diagnosing TESS integrated light curvesacceptedv0.92023-06-08 20:03:09 UTC902023-10-03 20:07:24 UTC820235605TobinM.WainerDepartment of Astronomy, University of Washington, Box 351580, Seattle, WA 98195, USA, Department of Physics and Astronomy, University of Utah, Salt Lake City, UT 84112, USA0000-0001-6320-2230TomWaggDepartment of Astronomy, University of Washington, Box 351580, Seattle, WA 98195, USA0000-0001-6147-5761VijithJacobPoovelilDepartment of Physics and Astronomy, University of Utah, Salt Lake City, UT 84112, USA0000-0002-9831-3501GailZasowskiDepartment of Physics and Astronomy, University of Utah, Salt Lake City, UT 84112, USA0000-0001-6761-935910.21105/joss.05605https://doi.org/10.5281/zenodo.8393595Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05605.pdfastronomy, variability, blending, star clusterstag:joss.theoj.org,2005:Paper/42862023-10-01T20:53:57Z2023-10-02T07:50:01ZRosalution: Supporting data accessibility, integration, curation, interoperability, and reuse for precision animal modelingaccepted0.6.02023-03-07 19:18:39 UTC902023-10-01 20:53:57 UTC820235443AngelinaE.Uno-AntonisonCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-4631-9135RababFatimaCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-3739-6331JamesSchererCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-4272-2082AlexanderMossCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0001-5112-0270DonnaBrownCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-8805-7225AleksandraFoksinskaHugh Kaul Precision Medicine Institute, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-1035-3294ManavalanGajapathyCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-8606-0113ElizabethJ.WilkDepartment of Cell, Developmental and Integrative Biology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-7078-1215BrittanyN.LasseigneDepartment of Cell, Developmental and Integrative Biology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-1642-8904ElizabethWortheyCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0003-4083-776410.21105/joss.05443https://doi.org/10.5281/zenodo.8380641Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05443.pdfanimal modeling, rare disease, diagnosis, genomics, phenotype, python, javascript, web applicationtag:joss.theoj.org,2005:Paper/38282023-07-26T13:30:49Z2023-07-27T00:01:46ZAmpTorch: A Python package for scalable fingerprint-based neural network training on multi-element systems with integrated uncertainty quantificationacceptedv0.12022-08-22 16:32:43 UTC872023-07-26 13:30:49 UTC820235035MuhammedShuaibiDepartment of Chemical Engineering, Carnegie Mellon University, United StatesYugeHuDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United States0000-0003-3648-7749XiangyunLeiDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United StatesBenjaminM.ComerDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United StatesMattAdamsDepartment of Chemical Engineering, Carnegie Mellon University, United StatesJacobParasSchool of Physics and School of Computer Science, Georgia Institute of Technology, United StatesRuiQiChenDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United StatesEricMusaDepartment of Chemical Engineering, University of Michigan, United StatesJosephMusielewiczDepartment of Chemical Engineering, Carnegie Mellon University, United StatesAndrewA.PetersonSchool of Engineering, Brown University, United States0000-0003-2855-9482AndrewJ.MedfordDepartment of Chemical and Biomolecular Engineering, Georgia Institute of Technology, United States0000-0001-8311-9581ZacharyUlissiDepartment of Chemical Engineering, Carnegie Mellon University, United States0000-0002-9401-491810.21105/joss.05035https://doi.org/10.5281/zenodo.8151492Python, C++, C, G-code, GAPhttps://joss.theoj.org/papers/10.21105/joss.05035.pdfmachine learning interatomic potentials, neural networks, molecular dynamicstag:joss.theoj.org,2005:Paper/37172023-06-27T21:40:04Z2023-06-28T00:01:43ZGORILLA: Guiding-center ORbit Integration with Local Linearization Approachacceptedv1.12022-07-13 10:32:58 UTC862023-06-27 21:40:04 UTC820234890MichaelEderInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria0000-0002-1392-1664LukasM. p.BauerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria0000-0003-3341-4085DanielForstenlechnerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaGeorgS.GraßlerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaSergeiV.KasilovInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria, Institute of Plasma Physics, National Science Center, “Kharkov Institute of Physics and Technology,” Akademicheskaya str. 1, 61108 Kharkov, Ukraine, Department of Applied Physics and Plasma Physics, V. N. Karazin Kharkov National University, Svobody sq. 4, 61022 Kharkov, UkraineWinfriedKernbichlerInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaMarkusMeisterhoferInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaMichaelScheidtInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, AustriaChristopherG.AlbertInstitut für Theoretische Physik - Computational Physics, Technische Universität Graz, Petersgasse 16, 8010 Graz, Austria0000-0003-4773-416X10.21105/joss.04890https://doi.org/10.5281/zenodo.8059175MATLAB, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04890.pdfFortran, Theoretical physics, Computational physics, Plasma physics, Plasma dynamics, Numerical integration, Hamiltonian mechanics, Kinetic theory, Magnetic confinement fusion, Fusion reactors, Tokamaks, Stellaratorstag:joss.theoj.org,2005:Paper/39222023-04-17T12:09:16Z2024-01-22T07:48:39ZAMIRIS: Agent-based Market model for the Investigation of Renewable and Integrated energy Systemsaccepted1.2.3.32022-09-23 18:29:25 UTC842023-04-17 12:09:16 UTC820235041ChristophSchimeczekGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0002-0791-9365KristinaNienhausGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0003-4180-6767UlrichFreyGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0002-9803-1336EvelynSperberGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0001-9093-5042SeyedfarzadSarfaraziGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0003-0532-5907FelixNitschGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0002-9824-3371JohannesKochemsGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0002-3461-3679A.Achraf ElGhaziGerman Aerospace Center (DLR), Institute of Networked Energy Systems, Curiestr. 4, 70563 Stuttgart, Germany0000-0001-5064-914810.21105/joss.05041https://doi.org/10.5281/zenodo.7756088Java, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05041.pdfagent-based, energy systems, electricity markettag:joss.theoj.org,2005:Paper/39502023-03-09T21:41:24Z2023-03-10T00:04:45ZOpenMSIStream: A Python package for facilitating integration of streaming data in diverse laboratory environmentsacceptedv1.0.02022-10-07 21:45:41 UTC832023-03-09 21:41:24 UTC820234896MargaretEminizerInstitute for Data Intensive Engineering and Science (IDIES), The Johns Hopkins University, USA0000-0003-4591-2225SamTabriskyDepartment of Biology, Dartmouth College, USA, Department of Computer Science, Dartmouth College, USA, Hopkins Extreme Materials Institute (HEMI), The Johns Hopkins University, USAAmirSharifzadehInstitute for Data Intensive Engineering and Science (IDIES), The Johns Hopkins University, USA0000-0002-4100-4898ChristopherDiMarcoHopkins Extreme Materials Institute (HEMI), The Johns Hopkins University, USA0000-0002-2267-938XJacobM.DiamondHopkins Extreme Materials Institute (HEMI), The Johns Hopkins University, USA, Department of Mechanical Engineering, The Johns Hopkins University, USA0000-0001-7905-4260K.t.RameshHopkins Extreme Materials Institute (HEMI), The Johns Hopkins University, USA0000-0003-2659-4698ToddC.HufnagelHopkins Extreme Materials Institute (HEMI), The Johns Hopkins University, USA, Department of Materials Science and Engineering, The Johns Hopkins University, USA, Department of Mechanical Engineering, The Johns Hopkins University, USA0000-0002-6373-9377TyrelM.McQueenHopkins Extreme Materials Institute (HEMI), The Johns Hopkins University, USA, Department of Materials Science and Engineering, The Johns Hopkins University, USA, Department of Chemistry, The Johns Hopkins University, USA, Institute for Quantum Matter (IQM), William H. Miller III Department of Physics and Astronomy, The Johns Hopkins University, USA0000-0002-8493-4630DavidElbertInstitute for Data Intensive Engineering and Science (IDIES), The Johns Hopkins University, USA, Hopkins Extreme Materials Institute (HEMI), The Johns Hopkins University, USA0000-0002-2292-180X10.21105/joss.04896https://doi.org/10.5281/zenodo.7713196Pythonhttps://joss.theoj.org/papers/10.21105/joss.04896.pdfdata streaming, science data, Apache Kafka, materials science