tag:joss.theoj.org,2005:/papers/tagged/graphs?page=2Journal of Open Source Software2023-04-29T15:06:01ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42762023-04-29T15:06:01Z2023-04-30T00:03:13Zgraphlayouts: Layout algorithms for network visualizations in Racceptedv0.8.42023-03-03 20:31:57 UTC842023-04-29 15:06:01 UTC820235238DavidSchochGESIS - Leibniz Institute for the Social Sciences0000-0003-2952-481210.21105/joss.05238https://doi.org/10.5281/zenodo.7870213R, C++https://joss.theoj.org/papers/10.21105/joss.05238.pdfnetwork visualization, graph drawing, layout algorithmstag:joss.theoj.org,2005:Paper/41542023-03-05T11:43:18Z2023-10-04T15:45:15ZMultilayerGraphs.jl: Multilayer Network Science in Juliaaccepted1.1.12023-01-07 16:18:32 UTC832023-03-05 11:43:18 UTC820235116ClaudioMoroniUniversity of Turin, Italy, Interdisciplinary Physics Team, Italy0000-0003-1274-6937PietroMonticoneUniversity of Turin, Italy, Interdisciplinary Physics Team, Italy0000-0002-2731-962310.21105/joss.05116https://doi.org/10.5281/zenodo.7697094Juliahttps://joss.theoj.org/papers/10.21105/joss.05116.pdfGraphs, Networks, Complexity, Complex-Networks, Complex-Systems, Network-Science, Network-Analysis, Multilayer-Graphs, Multilayer-Networkstag:joss.theoj.org,2005:Paper/38452023-01-08T20:38:49Z2023-01-09T00:01:20ZIGraph/M: graph theory and network analysis for Mathematicaaccepted0.6.22022-08-30 10:02:13 UTC812023-01-08 20:38:49 UTC820234899SzabolcsHorvátMax Planck Institute for Cell Biology and Genetics, Dresden, Germany \newline, Center for Systems Biology Dresden, Dresden, Germany \newline0000-0002-3100-523XJakubPodkalickiIndependent Developer, Poland \newlineGáborCsárdiRStudio \newline0000-0001-7098-9676TamásNepuszIndependent Developer, Hungary \newline0000-0002-1451-338XVincentTraagCentre for Science and Technology Studies, Leiden University, Leiden, Netherlands \newline0000-0003-3170-3879FabioZaniniLowy Cancer Research Centre, University of New South Wales, Kensington, NSW, Australia \newline0000-0001-7097-8539DanielNoomIndependent Developer, Netherlands \newline10.21105/joss.04899https://doi.org/10.5281/zenodo.7469228Mathematica, M, C++, Chttps://joss.theoj.org/papers/10.21105/joss.04899.pdfWolfram Language, graph theory, network analysistag:joss.theoj.org,2005:Paper/39372022-12-13T13:38:32Z2022-12-14T00:01:24Zcosasi: Graph Diffusion Source Inference in Pythonaccepted0.0.12022-10-03 18:27:51 UTC802022-12-13 13:38:32 UTC720224894LucasH.McCabeDigital and Analytic Solutions, Logistics Management Institute, Department of Mathematics, The George Washington University0000-0002-7383-282310.21105/joss.04894https://doi.org/10.5281/zenodo.7430558Pythonhttps://joss.theoj.org/papers/10.21105/joss.04894.pdfnetwork science, graph algorithms, network analysis, epidemics, simulation, communication, information theorytag:joss.theoj.org,2005:Paper/31372022-11-01T12:44:58Z2022-11-02T00:00:27Zrustworkx: A High-Performance Graph Library for Pythonacceptedv0.10.22021-10-28 15:12:06 UTC792022-11-01 12:44:58 UTC720223968MatthewTreinishIBM Quantum, IBM T.J. Watson Research Center, Yorktown Heights, USA \newline0000-0001-9713-2875IvanCarvalhoUniversity of British Columbia, Kelowna, Canada \newline0000-0002-8257-2103GeorgiosTsilimigkounakisNational Technical University of Athens, Athens, Greece \newline0000-0001-6174-0801NahumSáCentro Brasileiro de Pesquisas Físicas, Rio de Janeiro, Brazil0000-0002-3234-815410.21105/joss.03968https://doi.org/10.5281/zenodo.7158473Python, Rusthttps://joss.theoj.org/papers/10.21105/joss.03968.pdfgraph theorytag:joss.theoj.org,2005:Paper/37292022-10-10T13:34:23Z2022-10-11T00:00:28ZMNELAB: a graphical user interface for MNE-Pythonacceptedv0.8.42022-07-19 18:10:27 UTC782022-10-10 13:34:23 UTC720224650ClemensBrunnerInstitute of Psychology, Educational Neuroscience, University of Graz, Austria0000-0002-6030-223310.21105/joss.04650https://doi.org/10.5281/zenodo.7162311Pythonhttps://joss.theoj.org/papers/10.21105/joss.04650.pdfpython, eeg, meg, mne, guitag:joss.theoj.org,2005:Paper/37362022-09-05T11:15:59Z2022-09-06T00:01:05Zgraphenv: a Python library for reinforcement learning on graph search spacesacceptedv0.0.52022-07-21 22:03:11 UTC772022-09-05 11:15:59 UTC720224621DavidBiagioniComputational Sciences Center, National Renewable Energy Laboratory, Golden CO 80401, USA0000-0001-6140-1957CharlesEdisonTrippComputational Sciences Center, National Renewable Energy Laboratory, Golden CO 80401, USA0000-0002-5867-3561StruanClarkComputational Sciences Center, National Renewable Energy Laboratory, Golden CO 80401, USA0000-0003-0078-6560DmitryDuplyakinComputational Sciences Center, National Renewable Energy Laboratory, Golden CO 80401, USA0000-0001-5132-0168JeffreyLawBiosciences Center, National Renewable Energy Laboratory, Golden CO 80401, USA0000-0003-2828-1273PeterC. St.JohnBiosciences Center, National Renewable Energy Laboratory, Golden CO 80401, USA0000-0002-7928-372210.21105/joss.04621https://doi.org/10.5281/zenodo.7030161Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.04621.pdfreinforcement learning, graph search, combinatorial optimizationtag:joss.theoj.org,2005:Paper/30202022-08-20T07:04:24Z2022-08-21T17:21:08ZSPbLA: The Library of GPGPU-powered Sparse Boolean Linear Algebra Operationsacceptedv1.0.02021-09-07 11:45:38 UTC762022-08-20 07:04:24 UTC720223743EgorOrachevSaint Petersburg State University, JetBrains Research0000-0002-0424-4059MariaKarpenkoITMO UniversityPavelAlimovSaint Petersburg State UniversitySemyonGrigorevSaint Petersburg State University, JetBrains Research0000-0002-7966-069810.21105/joss.03743https://doi.org/10.5281/zenodo.7009938Python, C, C++https://joss.theoj.org/papers/10.21105/joss.03743.pdfsparse-matrix, linear-algebra, graph-analysis, graph-algorithms, nvidia-cuda, opencltag:joss.theoj.org,2005:Paper/35222022-08-12T21:53:58Z2022-08-15T19:37:10ZGenerative DAGs as an Interface Into Probabilistic Programming with the R Package causactacceptedv0.4.12022-04-27 21:11:31 UTC762022-08-12 21:53:58 UTC720224415AdamJ.FleischhackerAdam Fleischhacker, JP Morgan Chase Faculty Fellow, University of Delaware, Newark, DE 197160000-0003-2871-4788ThiHong NhungNguyenInstitute for Financial Services Analytics, University of Delaware, Newark, DE 1971610.21105/joss.04415https://doi.org/10.5281/zenodo.6949489Rhttps://joss.theoj.org/papers/10.21105/joss.04415.pdfBayesian inference, probabilistic programming, graphical models, directed acyclic graphstag:joss.theoj.org,2005:Paper/34452022-08-05T17:32:17Z2022-10-11T07:21:04ZGRAPL: A computational library for nonparametric structural causal modelling, analysis and inferenceacceptedv1.32022-03-29 00:23:34 UTC762022-08-05 17:32:17 UTC720224534MaxA.LittleSchool of Computer Science, University of Birmingham, UK, MIT, Cambridge, MA, USA0000-0002-1507-382210.21105/joss.04534https://doi.org/10.5281/zenodo.6959433Pythonhttps://joss.theoj.org/papers/10.21105/joss.04534.pdfstructural causal models, causal inference, DAGs, ADMGs