JOSS Papers: genomics

All Papers
2177
 Published Papers
1950
 Active Papers
227
published Published over 2 years ago

graphsim: An R package for simulating gene expression data from graph structures of biological pathways

R Ruby
@TomKellyGenetics
10.21105/joss.02161
published Published almost 3 years ago

LTRpred: de novo annotation of intact retrotransposons

R UnrealScript
@HajkD
10.21105/joss.02170
published Published almost 3 years ago

Recan: Python tool for analysis of recombination events in viral genomes

Python
@babinyurii
10.21105/joss.02014
published Published about 3 years ago

covtobed: a simple and fast tool to extract coverage tracks from BAM files

C++
@telatin
10.21105/joss.02119
published Published about 3 years ago

fqfa: A pure Python package for genomic sequence files

Python
@afrubin
10.21105/joss.02076
published Published about 3 years ago

FGTpartitioner: A rapid method for parsimonious delimitation of ancestry breakpoints in large genome-wide SNP datasets

Python
@tkchafin
10.21105/joss.02030
published Published about 3 years ago

ReferenceSeeker: rapid determination of appropriate reference genomes

Python
@oschwengers
10.21105/joss.01994
published Published about 3 years ago

NCBImeta: efficient and comprehensive metadata retrieval from NCBI databases

Python
@ktmeaton
10.21105/joss.01990
published Published over 3 years ago

alignparse: A Python package for parsing complex features from high-throughput long-read sequencing

Python Jupyter Notebook
@jbloom
10.21105/joss.01915
published Published over 3 years ago

Mashtree: a rapid comparison of whole genome sequence files

Perl
@lskatz
10.21105/joss.01762
Displaying papers 21 - 30 of 54 in total

Journal of Open Source Software is an affiliate of the Open Source Inititative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066