JOSS Papers: genomics

All Papers
2964
 Published Papers
2645
 Active Papers
319
published Published 11 months ago

Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance

Python Nextflow
@jhayer
10.21105/joss.05397
published Published 11 months ago

Rosalution: Supporting data accessibility, integration, curation, interoperability, and reuse for precision animal modeling

Python JavaScript
@serioushorncat
10.21105/joss.05443
published Published over 1 year ago

mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra

Python
@WSDeWitt
10.21105/joss.05227
published Published over 1 year ago

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

M4 C
@cagret
10.21105/joss.04363
published Published almost 2 years ago

Corekaburra: pan-genome post-processing using core gene synteny

Python
@milnus
10.21105/joss.04910
published Published almost 2 years ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R
@vlad0x00
10.21105/joss.04720
published Published almost 2 years ago

VPsearch: fast exact sequence similarity search for genomic sequences

Python Cython C++
@jvkersch
10.21105/joss.04236
published Published about 2 years ago

rTASSEL: An R interface to TASSEL for analyzing genomic diversity

R
@btmonier
10.21105/joss.04530
published Published about 2 years ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Python
@milnus
10.21105/joss.04369
published Published over 2 years ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
Displaying papers 11 - 20 of 67 in total

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ISSN 2475-9066