JOSS Papers: genome assembly

Published Papers

published Published 4 months ago

stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow

10.21105/joss.09695

published Published 10 months ago

PANKEGG: Integrative Visualisation and Comparison of Metagenome-Assembled Genomes Annotation, Taxonomy, and Quality

Python

10.21105/joss.09188

published Published about 1 year ago

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Python

10.21105/joss.08065

published Published about 2 years ago

Binette: a fast and accurate bin refinement tool to construct high quality Metagenome Assembled Genomes.

Python

10.21105/joss.06782

published Published about 6 years ago

CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies

R

10.21105/joss.02473

published Published over 7 years ago

GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats

Perl C++ Python

10.21105/joss.01083

published Published over 8 years ago

reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome

Perl R

10.21105/joss.00527

published Published over 8 years ago

chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data

R Perl

10.21105/joss.00464

published Published over 9 years ago

Kindel: indel-aware consensus for nucleotide sequence alignments

Python Jupyter Notebook

10.21105/joss.00282

published Published almost 10 years ago

RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences

Perl

10.21105/joss.00116

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