tag:joss.theoj.org,2005:/papers/tagged/fisheriesJournal of Open Source Software2024-03-24T14:42:39ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44352024-03-24T14:42:39Z2024-03-25T00:01:12ZViable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheriesaccepted1.0.02023-04-17 14:17:24 UTC952024-03-24 14:42:39 UTC920245731CarstenLemmenHelmholtz-Zentrum Hereon, Institute of Coastal Systems - Modeling and Analysis, Germany, carsten.lemmen@hereon.de0000-0003-3483-6036SaschaHokampUniversität Hamburg, Centre for Earth System Research and Sustainability (CEN), Germany0000-0002-2192-4013SerraÖreyHochschule Bremerhaven, Research Cluster Life Sciences, Bremerhaven, Germany0000-0003-3483-6036JürgenScheffranUniversität Hamburg, Centre for Earth System Research and Sustainability (CEN), Germany0000-0002-7171-306210.21105/joss.05731https://doi.org/10.5281/zenodo.7928199R, Schemehttps://joss.theoj.org/papers/10.21105/joss.05731.pdfNetLogo, Agent-based Model, ABM, North Sea, Fisheries, MuSSeL project, VIABLE, Plaice, Sole, Shrimptag:joss.theoj.org,2005:Paper/36912023-10-30T17:32:02Z2023-10-31T00:00:38ZSSMSE: An R package for Management Strategy Evaluation with Stock Synthesis Operating Modelsacceptedv0.2.62022-06-29 16:01:56 UTC902023-10-30 17:32:02 UTC820234937KathrynL.DoeringCaelum Research Corporation in support of Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration, Seattle, WA0000-0002-0396-7044NathanR.VaughanVaughan Analytics in support of Southeast Fisheries Science Center, National Oceanic and Atmospheric Administration, Miami, FL0009-0000-3054-6950JohnF.WalterSoutheast Fisheries Science Center, National Oceanic and Atmospheric Administration, Miami, FLRichardD.MethotNOAA Senior Scientist for Stock Assessments, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WASkylerR.SagareseSoutheast Fisheries Science Center, National Oceanic and Atmospheric Administration, Miami, FL0000-0002-6631-0103MatthewSmithSoutheast Fisheries Science Center, National Oceanic and Atmospheric Administration, Miami, FLNicholasA.FarmerSoutheast Regional Office, National Oceanic and Atmospheric Administration, St. Petersburg, FLShannonCalaySoutheast Fisheries Science Center, National Oceanic and Atmospheric Administration, Miami, FLNancieJ.CummingsSoutheast Fisheries Science Center, National Oceanic and Atmospheric Administration, Miami, FLKelliF.JohnsonNorthwest Fisheries Science Center, National Oceanic and Atmospheric Administration, Seattle, WA0000-0002-5149-451XKristinMarshallNorthwest Fisheries Science Center, National Oceanic and Atmospheric Administration, Seattle, WACassidyD.PetersonSoutheast Fisheries Science Center, National Oceanic and Atmospheric Administration, Beaufort, NC0000-0002-0836-3039IanG.TaylorNorthwest Fisheries Science Center, National Oceanic and Atmospheric Administration, Seattle, WA0000-0002-4232-5669ChantelR.WetzelNorthwest Fisheries Science Center, National Oceanic and Atmospheric Administration, Seattle, WA0000-0002-7573-824010.21105/joss.04937https://doi.org/10.5281/zenodo.10014307Rhttps://joss.theoj.org/papers/10.21105/joss.04937.pdfManagement Strategy Evaluation, fisheries, Stock Synthesis, stock assessmenttag:joss.theoj.org,2005:Paper/45202023-06-28T15:40:42Z2023-06-29T10:01:10ZPyafscgap.org: Open source multi-modal Python-based tools for NOAA AFSC RACE GAPacceptedv 1.0.02023-06-01 20:25:41 UTC862023-06-28 15:40:42 UTC820235593ASamuelPottingerUniversity of California, Berkeley, California, United States of America0000-0002-0458-4985GiuliaZarpellonUniversity of California, Berkeley, California, United States of America0000-0002-9122-470910.21105/joss.05593https://doi.org/10.5281/zenodo.8091843Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05593.pdffishery, alaska, groundfish, biodiversity, food, visualizationtag:joss.theoj.org,2005:Paper/36682023-06-22T18:20:23Z2023-06-23T00:01:38ZThe sspm R package for spatially-explicit surplus production population modelsacceptedv0.9.12022-06-21 14:30:02 UTC862023-06-22 18:20:23 UTC820234724ValentinLucetDepartment of Biology, Concordia University, Montreal, CA0000-0003-0268-818XEricJ.PedersenDepartment of Biology, Concordia University, Montreal, CA, Department of Biology, Memorial University of Newfoundland, St. John's, CA0000-0003-1016-540X10.21105/joss.04724https://doi.org/10.5281/zenodo.8015102Rhttps://joss.theoj.org/papers/10.21105/joss.04724.pdffisheries, management, modelling, GAMtag:joss.theoj.org,2005:Paper/44362023-06-10T12:39:03Z2023-06-12T07:55:31ZReference Point Calculator (RPC): A Shiny app for exploration of limit reference points for fisheries managementaccepted0.4.02023-04-17 20:07:34 UTC862023-06-10 12:39:03 UTC820235418QuangC.HuynhBlue Matter Science, North Vancouver, BC, Canada0000-0001-7835-4376TomR.CarruthersBlue Matter Science, North Vancouver, BC, Canada0000-0001-9173-9043AdrianR.HordykBlue Matter Science, North Vancouver, BC, Canada0000-0001-5620-344610.21105/joss.05418https://doi.org/10.5281/zenodo.8000031R, Less, SCSShttps://joss.theoj.org/papers/10.21105/joss.05418.pdfreference points, population dynamics, fisheries science, management strategy evaluationtag:joss.theoj.org,2005:Paper/25242022-03-21T18:04:18Z2022-03-22T00:00:30ZfishStan: Hierarchical Bayesian models for fisheriesacceptedv2.02021-03-16 16:45:40 UTC712022-03-21 18:04:18 UTC720223444RichardA.EricksonU.S. Geological Survey, Upper Midwest Environmental Sciences Center, La Crosse, WI, United States of America0000-0003-4649-482XDanielS.StichState University of New York at Oneonta, Oneonta, NY, United States of America0000-0002-8946-1115JillianL.HebertU.S. Geological Survey, Upper Midwest Environmental Sciences Center, La Crosse, WI, United States of America0000-0003-4893-828710.21105/joss.03444https://doi.org/10.5066/P9TT3ILOR, C++, Stanhttps://joss.theoj.org/papers/10.21105/joss.03444.pdfpopulation ecology, hierarchical Bayesian models, fisheries assessmenttag:joss.theoj.org,2005:Paper/27002021-10-21T13:30:14Z2021-10-22T00:01:23ZfishRman: A Shiny R Dashboard improving Global Fishing Watch data availabilityacceptedv1.0.02021-06-01 07:04:09 UTC662021-10-21 13:30:14 UTC620213467PasqualeBuonomoOpen-Source for Marine and Ocean Sciences (OSMOS)0000-0002-1848-931310.21105/joss.03467https://doi.org/10.5281/zenodo.5582567Rhttps://joss.theoj.org/papers/10.21105/joss.03467.pdffisheries, marine biology, global fishing watch, AIS data, dashboard, shiny, spatial analysistag:joss.theoj.org,2005:Paper/11042019-07-30T07:32:47Z2021-02-15T11:31:57Zlfda: Local Fisher Discriminant Analysis in Racceptedv1.1.22019-07-13 20:14:45 UTC392019-07-30 07:32:47 UTC420191572YuanTangAnt Financial Services Group, San Mateo, CA 94402, USA0000-0001-5243-233XWenxuanLiPurdue University, West Lafayette, IN 47907, USA10.21105/joss.01572https://doi.org/10.5281/zenodo.3352038Rhttps://joss.theoj.org/papers/10.21105/joss.01572.pdfdistance metric learning, statistics, clustering, machine learning, dimensionality reduction, local fisher discriminant analysis