tag:joss.theoj.org,2005:/papers/tagged/file?page=4Journal of Open Source Software2019-07-07T15:58:35ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/9332019-07-07T15:58:35Z2021-02-15T11:32:23ZGUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read filesacceptedv1.02019-03-19 10:22:25 UTC392019-07-07 15:58:35 UTC420191344ErikBernerWikMolecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden.HampusOlinMolecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden.CaitlinVigetunHaugheyMolecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden.LisaKlassonMolecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden.JacquesDainatIMBIM - Department of Medical Biochemistry and Microbiology, Box 582, S-751 23 Uppsala, SWEDEN., National Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab, Uppsala Biomedicinska Centrum (BMC), Husargatan 3, S-751 23 Uppsala, SWEDEN.0000-0002-6629-017310.21105/joss.01344https://doi.org/10.5281/zenodo.3268394Pythonhttps://joss.theoj.org/papers/10.21105/joss.01344.pdfRNA-seq, library-typetag:joss.theoj.org,2005:Paper/9212019-06-10T11:52:03Z2021-02-15T11:32:25ZMPIFiles.jl: A Julia Package for Magnetic Particle Imaging Filesacceptedv0.5.02019-03-09 21:12:24 UTC382019-06-10 11:52:03 UTC420191331TobiasKnoppSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0002-1589-8517MartinMöddelSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0002-4737-7863FlorianGrieseSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0003-3309-9783FranziskaWernerSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of TechnologyPatrykSzwargulskiSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0003-2563-9006NadineGdaniecSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0002-5060-0683MarijaBobergSection for Biomedical Imaging, University Medical Center Hamburg-Eppendorf, Institute for Biomedical Imaging, Hamburg University of Technology0000-0003-3419-748110.21105/joss.01331https://doi.org/10.5281/zenodo.3242352Juliahttps://joss.theoj.org/papers/10.21105/joss.01331.pdfMagnetic Particle Imaging, HDF5, MDFtag:joss.theoj.org,2005:Paper/7352019-03-26T06:29:14Z2021-02-15T11:32:46Zvcftoolz: a Python package for comparing and evaluating Variant Call Format files.accepted1.0.02018-11-27 13:36:06 UTC352019-03-26 06:29:14 UTC420191144SteveDavisU.S. Food and Drug Administration0000-0002-5581-192210.21105/joss.01144https://doi.org/10.5281/zenodo.2583998Pythonhttps://joss.theoj.org/papers/10.21105/joss.01144.pdfbioinformatics, next-generation sequencing, variant call format, VCFtag:joss.theoj.org,2005:Paper/8382019-03-14T13:51:30Z2021-02-15T11:32:35Zdfitspy: a dfits|fitsort implementation in pythonacceptedv19.1.52019-01-29 01:43:19 UTC352019-03-14 13:51:30 UTC420191249RomainThomasEuropean Southern Observatory, Av. Alonso de Córdoa 3107, 7630355 Vitacura, Santiago, Chile0000-0001-8385-327610.21105/joss.01249https://doi.org/10.5281/zenodo.2592698Pythonhttps://joss.theoj.org/papers/10.21105/joss.01249.pdffits files, Astronomytag:joss.theoj.org,2005:Paper/8252019-02-28T04:47:11Z2021-02-15T11:32:37ZBedparse: feature extraction from BED filesacceptedv0.2.02019-01-22 15:47:36 UTC342019-02-28 04:47:11 UTC420191228TommasoLeonardiThe Gurdon Institute, University of Cambridge, Cambridge, UK, Center for Genomic Science IIT\@SEMM, Istituto Italiano di Tecnologia (IIT), Milan, Italy0000-0002-4449-186310.21105/joss.01228https://doi.org/10.5281/zenodo.2578820Pythonhttps://joss.theoj.org/papers/10.21105/joss.01228.pdfBioinformatics, Genomics, BED formattag:joss.theoj.org,2005:Paper/8142019-02-04T18:30:41Z2021-02-15T11:32:39ZBladeX: Python Blade Morphingacceptedv0.12019-01-15 10:01:52 UTC342019-02-04 18:30:41 UTC420191203MahmoudGadallaInternational School of Advanced Studies, SISSA, Trieste, Italy0000-0001-9507-9468MarcoTezzeleInternational School of Advanced Studies, SISSA, Trieste, Italy0000-0001-9747-6328AndreaMolaInternational School of Advanced Studies, SISSA, Trieste, Italy0000-0002-4483-0212GianluigiRozzaInternational School of Advanced Studies, SISSA, Trieste, Italy0000-0002-0810-881210.21105/joss.01203https://doi.org/10.5281/zenodo.2556690Pythonhttps://joss.theoj.org/papers/10.21105/joss.01203.pdfBlade construction, Blade morphing, CAD filestag:joss.theoj.org,2005:Paper/4222019-01-11T14:06:29Z2021-02-15T11:33:35Z3D ultrasound file reading and coordinate transformationsaccepted0.012018-02-28 12:43:52 UTC332019-01-11 14:06:29 UTC420191063PádraigT.LooneyNuffield Department of Obstetrics and Gynaecology, University of Oxford,Level 3, Women’s Centre, John Radcliffe Hospital, Oxford0000-0002-0764-5413GordonN.StevensonSchool of Womens and Childrens Health, University of New South Wales, Randwick, NSW, Australia0000-0002-2809-8084SallyL.CollinsNuffield Department of Obstetrics and Gynaecology, University of Oxford,Level 3, Women’s Centre, John Radcliffe Hospital, Oxford, Fetal Medicine Unit, The Womens Centre, John Radcliffe Hospital Oxford0000-0002-0648-743310.21105/joss.01063https://doi.org/10.5281/zenodo.2537876C++https://joss.theoj.org/papers/10.21105/joss.01063.pdfITK, 3D Ultrasoundtag:joss.theoj.org,2005:Paper/6452018-12-06T01:01:27Z2021-02-15T13:59:01Z| SWEpy: A Python Library for Quick and Easy Access and Manipulation of MEaSUREs CETB Files for SWE Analysisacceptedv1.1.52018-10-01 16:43:44 UTC322018-12-06 01:01:27 UTC320181018WilliamM.NorrisEarth Lab, University of Colorado Boulder0000-0002-6772-9600CarsonJ.q.FarmerEarth Lab, University of Colorado Boulder0000-0003-1643-597610.21105/joss.01018https://doi.org/10.5281/zenodo.1849824Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.01018.pdfsnow, swe, data after_success, data processingtag:joss.theoj.org,2005:Paper/4532018-07-09T01:12:10Z2021-02-15T11:33:30Zpdfsearch: Search Tools for PDF Filesacceptedv0.2.02018-03-30 18:37:48 UTC272018-07-09 01:12:10 UTC32018668BrandonLeBeauUniversity of Iowa0000-0002-1265-876110.21105/joss.00668https://doi.org/10.5281/zenodo.1294067Rhttps://joss.theoj.org/papers/10.21105/joss.00668.pdfKeyword Search, PDF, reproducible researchtag:joss.theoj.org,2005:Paper/5122018-06-21T18:18:03Z2021-02-15T11:33:20ZGeneral binary file parser.accepted0.0.202018-06-03 10:30:06 UTC262018-06-21 18:18:03 UTC32018766JeroenF.j.LarosLeiden University Medical Center,10.21105/joss.00766https://doi.org/10.5281/zenodo.1295625Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.00766.pdfbinary, parser, yaml, json, read write