JOSS Papers: epidemiology

Published Papers

published Published 5 months ago

Mashpit: sketching out genomic epidemiology

Python

10.21105/joss.07306

published Published 8 months ago

primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other

Python

10.21105/joss.06850

published Published 10 months ago

MetaCast: A package for broadCASTing epidemiological and ecological models over META-populations.

Python Jupyter Notebook

10.21105/joss.06851

published Published 10 months ago

ddtlcm: An R package for overcoming weak separation in Bayesian latent class analysis via tree-regularization

R

10.21105/joss.06220

published Published 11 months ago

dataquieR 2: An updated R package for FAIR data quality assessments in observational studies and electronic health record data

R JavaScript

10.21105/joss.06581

published Published over 2 years ago

localcovid19now: processing and mapping COVID-19 case data at subnational scales

R Vim Snippet

10.21105/joss.04898

published Published over 2 years ago

tipr: An R package for sensitivity analyses for unmeasured confounders

R

10.21105/joss.04495

published Published over 2 years ago

BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees

Python C++ Cython

10.21105/joss.04433

published Published over 3 years ago

MetaWards: A flexible metapopulation framework for modelling disease spread

Python C

10.21105/joss.03914

published Published over 3 years ago

individual: An R package for individual-based epidemiological models

R C++ C

10.21105/joss.03539

Displaying papers 1 - 10 of 19 in total

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