tag:joss.theoj.org,2005:/papers/tagged/dynamic?page=4Journal of Open Source Software2023-05-19T14:59:08ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42882023-05-19T14:59:08Z2023-05-20T00:01:17ZVaMPy: An Automated and Objective Pipeline for Modeling Vascular Geometriesacceptedv1.0.12023-03-08 11:08:28 UTC852023-05-19 14:59:08 UTC820235278HenrikA.KjeldsbergDepartment of Computational Physiology, Simula Research Laboratory, Oslo, Norway0000-0002-7764-4248AslakW.BergersenDepartment of Computational Physiology, Simula Research Laboratory, Oslo, Norway0000-0001-5063-3680KristianValen-SendstadDepartment of Computational Physiology, Simula Research Laboratory, Oslo, Norway0000-0002-2907-017110.21105/joss.05278https://doi.org/10.5281/zenodo.7950605Pythonhttps://joss.theoj.org/papers/10.21105/joss.05278.pdfpre-processing, computational fluid dynamics, post-processing, vascular modeling, automated objective pipelinetag:joss.theoj.org,2005:Paper/32712023-04-22T07:17:47Z2023-04-26T19:28:11ZHylleraasMD: Massively parallel hybrid particle-field molecular dynamics in Pythonacceptedv1.0.32022-01-07 23:14:41 UTC842023-04-22 07:17:47 UTC820234149MortenLedumDepartment of Chemistry, and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, PO Box 1033 Blindern, 0315 Oslo, Norway0000-0003-4244-4876ManuelCarrerDepartment of Chemistry, and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, PO Box 1033 Blindern, 0315 Oslo, Norway0000-0002-8777-4310SamiranSenDepartment of Chemistry, and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, PO Box 1033 Blindern, 0315 Oslo, Norway0000-0002-1922-7796XinmengLiDepartment of Chemistry, and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, PO Box 1033 Blindern, 0315 Oslo, Norway0000-0002-6863-6078MicheleCascellaDepartment of Chemistry, and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, PO Box 1033 Blindern, 0315 Oslo, Norway0000-0003-2266-5399SigbjørnLølandBoreDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States of America0000-0002-8620-488510.21105/joss.04149https://doi.org/10.5281/zenodo.7839898Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.04149.pdfchemistry, physics, molecular dynamics, coarse-grained, hybrid particle-fieldtag:joss.theoj.org,2005:Paper/42062023-04-17T08:01:50Z2023-04-18T00:02:31ZSolvationAnalysis: A Python toolkit for understanding liquid solvation structure in classical molecular dynamics simulationsacceptedv0.2.02023-02-14 19:07:27 UTC842023-04-17 08:01:50 UTC820235183OrionArcherCohenMaterials Science Division, Lawrence Berkeley National Laboratory, United States of America0000-0003-3940-2456HugoMacdermott-OpeskinAustralian National University, Australia0000-0002-7393-7457LaurenLeeMaterials Science Division, Lawrence Berkeley National Laboratory, United States of AmericaTingzhengHouInstitute of Materials Research, Shenzhen International Graduate School, Tsinghua University, China0000-0002-7163-2561KaraD.FongMaterials Science Division, Lawrence Berkeley National Laboratory, United States of America0000-0002-0711-097XRyanKingsburyEnergy Storage & Distributed Resources Division, Lawrence Berkeley National Laboratory, United States of America0000-0002-7168-3967JingyangWangMaterials Science Division, Lawrence Berkeley National Laboratory, United States of America0000-0003-3307-5132KristinA.PerssonDepartment of Materials Science, University of California, United States of America, Molecular Foundry, Lawrence Berkeley National Laboratory, United States of America0000-0003-2495-550910.21105/joss.05183https://doi.org/10.5281/zenodo.7806199Pythonhttps://joss.theoj.org/papers/10.21105/joss.05183.pdfpython, chemistry, electrolytes, molecular dynamics, solvation structuretag:joss.theoj.org,2005:Paper/34192023-04-11T15:47:05Z2023-06-08T19:07:56ZFlowSieve: A Coarse-Graining Utility for Geophysical Flows on the Sphereacceptedv3.0.02022-03-11 16:47:12 UTC842023-04-11 15:47:05 UTC820234277BenjaminA.StorerDepartment of Mechanical Engingeering, University of Rochester, USA0000-0001-5955-2158HusseinAluieDepartment of Mechanical Engingeering, University of Rochester, USA0000-0003-3516-369710.21105/joss.04277https://doi.org/10.5281/zenodo.7818192C++, C, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04277.pdfcoarse graining, scale decomposition, fluid dynamicstag:joss.theoj.org,2005:Paper/37322023-04-05T12:33:29Z2023-04-06T00:03:30ZRTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Methodacceptedv1.0.12022-07-20 06:49:04 UTC842023-04-05 12:33:29 UTC820234763ChristofObertscheiderAerospace Engineering Department, University of Applied Sciences Wiener Neustadt, Johannes-Gutenberg-Straße 3, 2700, Wiener Neustadt, AustriaEwaldFausterProcessing of Composites Group, Department Polymer Engineering and Science, Montanuniversität Leoben, Otto Glöckl-Straße 2, 8700 Leoben, Austria10.21105/joss.04763https://doi.org/10.5281/zenodo.7799266Juliahttps://joss.theoj.org/papers/10.21105/joss.04763.pdfComputational Fluid Dynamics (CFD), Shell mesh, Resin Transfer moulding (RTM), Liquid composite moulding (LCM), Filling simulationtag:joss.theoj.org,2005:Paper/39792023-03-21T11:34:30Z2023-03-22T00:03:16ZHigh-performance neural population dynamics modeling enabled by scalable computational infrastructureacceptedv1.0.02022-10-26 06:03:04 UTC832023-03-21 11:34:30 UTC820235023AashishN.PatelDepartment of Electrical and Computer Engineering, University of California San Diego, United States of America, Institute for Neural Computation, University of California San Diego, United States of AmericaAndrewR.SedlerCenter for Machine Learning, Georgia Institute of Technology, United States of America, Department of Biomedical Engineering, Georgia Institute of Technology, United States of America0000-0001-9480-0698JingyaHuangDepartment of Electrical and Computer Engineering, University of California San Diego, United States of AmericaChethanPandarinathCenter for Machine Learning, Georgia Institute of Technology, United States of America, Department of Biomedical Engineering, Georgia Institute of Technology, United States of America, Department of Neurosurgery, Emory University, United States of America, These authors contributed equallyVikashGiljaDepartment of Electrical and Computer Engineering, University of California San Diego, United States of America, These authors contributed equally10.21105/joss.05023https://doi.org/10.5281/zenodo.7719505Python, Smartyhttps://joss.theoj.org/papers/10.21105/joss.05023.pdfautolfads, kubeflow, ray, neurosciencetag:joss.theoj.org,2005:Paper/39122023-03-13T12:07:49Z2023-03-14T00:04:35ZNIMPHS: Numerous Instruments to Manipulate and Post-process Hydraulic Simulationsaccepted0.4.12022-09-22 11:01:55 UTC832023-03-13 12:07:49 UTC820234868FélixOlartARTELIA, France, Université Gustave Eiffel, FranceThibaultOudartARTELIA, FranceOlivierBertrandARTELIA, FranceMehdi-PierreDaouARTELIA, France10.21105/joss.04868https://doi.org/10.5281/zenodo.7696769Pythonhttps://joss.theoj.org/papers/10.21105/joss.04868.pdfOpenFOAM, TELEMAC-MASCARET, Computational fluid dynamics, Geophysical fluid dynamics, Blendertag:joss.theoj.org,2005:Paper/34612023-03-07T17:51:56Z2023-03-08T00:04:27Zpydynpd: A Python package for dynamic panel modelacceptedv0.1.52022-04-09 03:33:55 UTC832023-03-07 17:51:56 UTC820234416DazhongWuDepartment of Business Management, School of Business and Public Administration, University of the District of Columbia, USAJianHuaDepartment of Business Management, School of Business and Public Administration, University of the District of Columbia, USAFengXuDepartment of Business Management, School of Business and Public Administration, University of the District of Columbia, USA10.21105/joss.04416https://doi.org/10.5281/zenodo.6350362Jupyter Notebook, R, Python, Statahttps://joss.theoj.org/papers/10.21105/joss.04416.pdfdynamic panel modeltag:joss.theoj.org,2005:Paper/40692023-03-07T15:47:02Z2023-03-08T00:04:13ZBiosiglive: an Open-Source Python Package for Real-time Biosignal Processingacceptedv2.0.02022-12-02 21:22:00 UTC832023-03-07 15:47:02 UTC820235091AmedeoCegliaInstitute of Biomedical Engineering, Faculty of Medicine, University of Montreal, Canada0000-0002-7854-9410FelipeVerdugoFaculty of Music, University of Montreal, Canada0000-0003-2486-3444MickaelBegonInstitute of Biomedical Engineering, Faculty of Medicine, University of Montreal, Canada0000-0002-4107-916010.21105/joss.05091https://doi.org/10.5281/zenodo.7703146Pythonhttps://joss.theoj.org/papers/10.21105/joss.05091.pdfpython, biomechanics, electromyography, kinematics, dynamicstag:joss.theoj.org,2005:Paper/39032023-02-28T11:06:40Z2023-03-01T00:04:47ZWakeflow: A Python package for semi-analytic models of planetary wakesacceptedv1.2.02022-09-19 07:53:20 UTC822023-02-28 11:06:40 UTC820234863ThomasHilderSchool of Physics and Astronomy, Monash University, Australia0000-0001-7641-5235DanieleFasanoDipartimento di Fisica, Università degli Studi di Milano, Italy0000-0003-4679-4072FrancescoBollatiDipartimento di Scienza e Alta Tecnologia, Università degli Studi dell'Insubria, ItalyJacobVandenbergSchool of Mathematics, Monash University, Australia0000-0002-4055-972810.21105/joss.04863https://doi.org/10.5281/zenodo.7679415Pythonhttps://joss.theoj.org/papers/10.21105/joss.04863.pdfastronomy, dynamics, protoplanetary disks, planet formation