tag:joss.theoj.org,2005:/papers/tagged/data%20managementJournal of Open Source Software2024-02-17T07:07:40ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/49802024-02-17T07:07:40Z2024-02-18T00:01:01ZREDCapTidieR: Extracting complex REDCap databases into tidy tablesacceptedv1.0.02023-12-05 18:25:20 UTC942024-02-17 07:07:40 UTC920246277RichardHannaDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania0009-0005-6496-8154EzraPorterDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania0000-0002-4690-8343StephanyRomeroDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PennsylvaniaPaulWildenhainDivision of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PennsylvaniaWilliamBeasleyDepartment of Pediatrics, The University of Oklahoma Health Sciences Center, College of Medicine, Oklahoma City, Oklahoma, USA0000-0002-5613-5006StephanKadaukeDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, Department of Pathology and Laboratory Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, Division of Transfusion Medicine, Children's Hospital of Philadelphia, Pennsylvania, Division of Pathology Informatics, Children's Hospital of Philadelphia, Pennsylvania0000-0003-2996-803410.21105/joss.06277https://doi.org/10.5281/zenodo.10658773Rhttps://joss.theoj.org/papers/10.21105/joss.06277.pdfREDCap, data managementtag:joss.theoj.org,2005:Paper/45282023-12-04T10:49:39Z2023-12-05T00:00:59ZBidsme: expandable BIDS-ifier of brain imagery datasetsaccepted1.4.0.post42023-06-06 14:11:38 UTC922023-12-04 10:49:39 UTC820235575NikitaBeliyGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0009-0002-0830-3279CamilleGuilleminGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0002-5377-7417EmelinePommierTélécom Physique Strasbourg, Université de Strasbourg, FranceGrégoryHammadGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0003-1083-3869ChristophePhillipsGIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium0000-0002-4990-425X10.21105/joss.05575https://doi.org/10.5281/zenodo.10185300Pythonhttps://joss.theoj.org/papers/10.21105/joss.05575.pdfBIDS, data management, standardizationtag:joss.theoj.org,2005:Paper/46242023-10-25T15:50:31Z2023-10-26T00:01:02ZCurifactory: A research experiment manageracceptedv0.14.22023-07-24 18:58:22 UTC902023-10-25 15:50:31 UTC820235793NathanMartindaleOak Ridge National Laboratory, USA0000-0002-5036-5433ScottL.StewartOak Ridge National Laboratory, USA0000-0003-4320-5818JasonHiteOak Ridge National Laboratory, USA0000-0001-8931-5815MarkB.AdamsOak Ridge National Laboratory, USA0000-0002-5414-280010.21105/joss.05793https://doi.org/10.5281/zenodo.10035496Pythonhttps://joss.theoj.org/papers/10.21105/joss.05793.pdfdata analysis management, analysis orchestration, analysis reporting, research experiment managementtag:joss.theoj.org,2005:Paper/43632023-10-15T06:24:40Z2023-10-16T10:44:49ZNOMAD: A distributed web-based platform for managing materials science research dataacceptedv1.1.82023-03-24 09:37:47 UTC902023-10-15 06:24:40 UTC820235388MarkusScheidgenDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-8038-2277LauriHimanenDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-3130-8193AlvinNoeLadinesDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0003-0077-2097DavidSikterDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-2102-7160MohammadNakhaeeDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0003-4146-0129ÁdámFeketeDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-6263-897XTheodoreChangDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-4911-0230AmirGolparvarDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-2412-6615JoséA.MárquezDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-8173-2566SandorBrockhauserDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-9700-4803SebastianBrücknerLeibniz Institut für Kristallzüchtung, Berlin, Germany0000-0002-5969-847XLucaM.GhiringhelliDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0001-5099-3029FelixDietrichSchool of Computation, Information and Technology, Technical University of Munich, Munich, Germany0000-0002-2906-1769DanielLehmbergSchool of Computation, Information and Technology, Technical University of Munich, Munich, Germany0000-0002-4012-5014TheaDenellDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0009-0000-7185-9363AndreaAlbinoDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0001-9280-7431HampusNäsströmDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-3264-1692SherjeelShabihDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0009-0008-6635-4465FlorianDobenerDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0003-1987-6224MarkusKühbachDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-7117-5196RubelMozumderDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0009-0007-5926-6646JosephF.RudzinskiDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0003-3403-640XNathanDaelmanDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-7647-1816JoséM.PizarroDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-6751-8192MartinKubanDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-1619-2460CuauhtemocSalazarDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0002-9635-5062PavelOndračkaDepartment of Plasma Physics and Technology, Masaryk University, Brno, Czech Republic0000-0003-0729-629XHans-JoachimBungartzSchool of Computation, Information and Technology, Technical University of Munich, Munich, Germany0000-0002-0171-0712ClaudiaDraxlDepartment of Physics, Humboldt-Universität zu Berlin, Berlin, Germany0000-0003-3523-665710.21105/joss.05388https://doi.org/10.5281/zenodo.8366163https://joss.theoj.org/papers/10.21105/joss.05388.pdfPython, javascript, database, materials science, data management, electronic lab notebook, FAIRtag:joss.theoj.org,2005:Paper/39662023-06-22T15:55:09Z2023-06-23T00:01:36ZAirTrafficSim: An open-source web-based air traffic simulation platform.acceptedv0.0.02022-10-17 08:18:35 UTC862023-06-22 15:55:09 UTC820234916KaYiuHuiDepartment of Mechanical and Aerospace Engineering, The Hong Kong University of Science and Technology, Hong Kong SARChrisHc.NguyenDepartment of Mechanical and Aerospace Engineering, The Hong Kong University of Science and Technology, Hong Kong SARGoNamLuiDepartment of Mechanical and Aerospace Engineering, The Hong Kong University of Science and Technology, Hong Kong SARRheaP.LiemDepartment of Mechanical and Aerospace Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR10.21105/joss.04916https://doi.org/10.5281/zenodo.8070119https://joss.theoj.org/papers/10.21105/joss.04916.pdfPython, Aviation, Air traffic management, Multi-agent simulation, Data visualizationtag:joss.theoj.org,2005:Paper/26712021-10-19T12:20:18Z2021-10-20T00:03:23Zddop: A python package for data-driven operations managementacceptedv0.6.52021-05-11 08:25:26 UTC662021-10-19 12:20:18 UTC620213429AndreasPhilippiChair of Logistics and Quantitative Methods, Julius-Maximilians-Universität Würzburg, Sandering 2, Würzburg 97070, Germany0000-0002-6508-9128SimoneButtlerChair of Logistics and Quantitative Methods, Julius-Maximilians-Universität Würzburg, Sandering 2, Würzburg 97070, Germany0000-0003-3986-057XNikolaiSteinChair of Logistics and Quantitative Methods, Julius-Maximilians-Universität Würzburg, Sandering 2, Würzburg 97070, Germany0000-0001-9847-344410.21105/joss.03429https://doi.org/10.5281/zenodo.5577966Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.03429.pdfscikit-learn, data-driven operations management, newsvendortag:joss.theoj.org,2005:Paper/27552021-08-12T15:44:16Z2021-08-17T14:01:52ZBuilding, Importing, and Exporting GEXF Graph Files with rgexfaccepted0.16.12021-06-13 01:38:26 UTC642021-08-12 15:44:16 UTC620213456GeorgeG VegaYonDepartment of Preventive Medicine, University of Southern California0000-0002-3171-084410.21105/joss.03456https://doi.org/10.5281/zenodo.5182709R, JavaScript, Pythonhttps://joss.theoj.org/papers/10.21105/joss.03456.pdfsna, networks, graph visualization, data visualization, data management, r programmingtag:joss.theoj.org,2005:Paper/26212021-07-01T04:49:26Z2021-07-02T00:01:30ZDataLad: distributed system for joint management of code, data, and their relationshipaccepted0.14.32021-05-03 19:52:41 UTC632021-07-01 04:49:26 UTC620213262YaroslavO.HalchenkoCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA0000-0003-3456-2493KyleMeyerCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USABenjaminPoldrackInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0001-7628-0801DebanjumSinghSolankyCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA0000-0002-0774-6564AdinaS.WagnerInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0003-2917-3450JasonGorsCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USADaveMacFarlaneMcGill Center for Integrative Neuroscience, Montreal, CanadaDorianPustinaCHDI Management/CHDI Foundation, Princeton, NJ, USA0000-0002-2834-7220VanessaSochatLawrence Livermore National Lab, Livermore, CA, USA0000-0002-4387-3819SatrajitS.GhoshMassachusetts Institute of Technology, Cambridge, MA, USA0000-0002-5312-6729ChristianMönchInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0002-3092-0612ChristopherJ.MarkiewiczStanford University, Stanford, CA, USA0000-0002-6533-164XLauraWaiteInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0003-2213-7465IlyaShlyakhterQuest Diagnostics, Marlborough, MA, USA0000-0002-9854-5118Alejandrode la VegaThe University of Austin at Austin, Austin, TX, USA0000-0001-9062-3778SoichiHayashiIndiana University, Bloomington, IN, USA0000-0003-3641-3491ChristianOlafHäuslerInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0002-0936-317XJean-BaptistePolineFaculty of Medicine and Health Sciences, McConnell Brain Imaging Center, McGill University, Montreal, Canada0000-0002-9794-749XTobiasKadelkaInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany0000-0002-0152-3490KustiSkyténUniversity of Oslo, Oslo, Norway0000-0001-7460-1157DorotaJareckaMassachusetts Institute of Technology, Cambridge, MA, USA0000-0001-8282-2988DavidKennedyUniversity of Massachusetts Medical School, Worcester, MA, USA0000-0002-9377-0797TedStraussMontreal Neurological Institute, McGill University, Montreal, Canada0000-0002-1927-666XMattCieslakUniversity of Pennsylvania, Philadelphia, PA0000-0002-1931-4734PeterVavraDepartment of Biological Psychology, Otto-von-Guericke-University Magdeburg, Magdeburg, Germany0000-0001-8432-5459Horea-IoanIoanasDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, USA0000-0001-7037-2449RobinSchneiderIndependent Developer, Germany0000-0003-1952-5459MikaPflügerPotsdam Institute for Climate Impact Research (PIK) e. V., Potsdam, Germany0000-0002-7814-8916JamesV.HaxbyCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USASimonB.EickhoffInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0001-6363-2759MichaelHankeInstitute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany, Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany0000-0001-6398-637010.21105/joss.03262https://doi.org/10.5281/zenodo.5034875https://joss.theoj.org/papers/10.21105/joss.03262.pdfPython, command line, version control, data management, data distribution, data provenance, reproducibilitytag:joss.theoj.org,2005:Paper/18062021-06-17T17:15:49Z2021-06-18T00:02:28ZScience Capsule - Capturing the Data Life Cycleacceptedv0.1.02020-06-28 03:20:05 UTC622021-06-17 17:15:49 UTC620212484DevarshiGhoshalLawrence Berkeley National Lab0000-0002-6819-6949LudovicoBianchiLawrence Berkeley National Lab0000-0002-0527-1534AbdelilahEssiariLawrence Berkeley National LabMichaelBeachLawrence Berkeley National Lab, University of WashingtonDrewPaineLawrence Berkeley National Lab0000-0003-0711-9744LavanyaRamakrishnanLawrence Berkeley National Lab0000-0003-1761-413210.21105/joss.02484https://doi.org/10.5281/zenodo.4968576Groovy, Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.02484.pdfreproducibility, scientific workflows, data management, high performance computing, big data analyticstag:joss.theoj.org,2005:Paper/20392021-05-09T13:26:57Z2021-05-10T12:34:32ZPredihood: an open-source tool for predicting neighbourhoods' informationaccepted1.02020-09-21 22:09:26 UTC612021-05-09 13:26:57 UTC620212805NellyBarretLIRIS UMR5205, Université Claude Bernard Lyon 1, Lyon, France0000-0002-3469-4149FabienDuchateauLIRIS UMR5205, Université Claude Bernard Lyon 1, Lyon, France0000-0001-6803-917XFranckFavettaLIRIS UMR5205, Université Claude Bernard Lyon 1, Lyon, France0000-0003-2039-348110.21105/joss.02805https://doi.org/10.5281/zenodo.4737729Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.02805.pdfMongoDB, data management, neighbourhood, prediction, machine learning