tag:joss.theoj.org,2005:/papers/tagged/csvJournal of Open Source Software2024-01-22T15:00:12ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48382024-01-22T15:00:12Z2024-01-23T11:55:19Zcstag and cstag-cli: tools for manipulating and visualizing cs tagsacceptedv1.0.42023-10-06 03:25:34 UTC932024-01-22 15:00:12 UTC920246066AkihiroKunoDepartment of Anatomy and Embryology, University of Tsukuba, Tsukuba, Ibaraki, Japan, Laboratory Animal Resource Center, Trans-border Medical Research Center, University of Tsukuba, Tsukuba, Ibaraki, Japan.0000-0002-4674-688210.21105/joss.06066https://doi.org/10.5281/zenodo.10544838Pythonhttps://joss.theoj.org/papers/10.21105/joss.06066.pdfpython, genomics, sequencing, bioinformaticstag:joss.theoj.org,2005:Paper/36102022-09-05T10:04:38Z2022-10-11T06:54:05ZBTE: a Python module for pandemic-scale mutation-annotated phylogenetic treesacceptedv0.8.12022-05-17 23:22:33 UTC772022-09-05 10:04:38 UTC720224433JakobMcBroomeDepartment of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA, Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA0000-0002-5002-5156YatishTurakhiaDepartment of Electrical and Computer Engineering, University of California, San Diego; San Diego, CA 92093, USA0000-0001-5600-2900RussellCorbett-DetigDepartment of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA, Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA0000-0001-6535-247810.21105/joss.04433https://doi.org/10.5281/zenodo.7036163Python, C++, Cythonhttps://joss.theoj.org/papers/10.21105/joss.04433.pdfphylogenetics, epidemiology, SARS-CoV-2tag:joss.theoj.org,2005:Paper/29982021-10-14T11:05:41Z2021-10-15T00:03:59ZShUShER: private browser-based placement of sensitive genome samples on phylogenetic treesacceptedv0.5.02021-08-27 01:47:30 UTC662021-10-14 11:05:41 UTC620213677AlexanderKramerDepartment of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA, Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA0000-0003-3630-3209YatishTurakhiaDepartment of Electrical and Computer Engineering, University of California, San Diego; San Diego, CA 92093, USA0000-0001-5600-2900RussellCorbett-DetigDepartment of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA, Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA0000-0001-6535-247810.21105/joss.03677https://doi.org/10.5281/zenodo.5567374Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.03677.pdfphylogenetics, WebAssembly, React, SARS-CoV-2tag:joss.theoj.org,2005:Paper/26732021-07-15T14:28:41Z2021-07-15T14:28:41Zcovidregionaldata: Subnational data for COVID-19 epidemiologyaccepted0.9.12021-05-12 15:00:05 UTC632021-07-15 14:28:41 UTC620213290JosephPalmerDepartment of Biological Sciences, Royal Holloway University of London0000-0002-5593-9352KatharineSherrattCentre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine0000-0003-2049-3423RichardMartin-NielsenNoneJonnieBevanTessellaHamishGibbsCentre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine0000-0003-4413-453XCmmidCOVID-19 WorkingGroupCentre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical MedicineSebastianFunkCentre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical MedicineSamAbbottCentre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine0000-0001-8057-803710.21105/joss.03290https://doi.org/10.5281/zenodo.5059988Rhttps://joss.theoj.org/papers/10.21105/joss.03290.pdfCOVID-19, Open data, rstats, Sars-Cov-2tag:joss.theoj.org,2005:Paper/5602019-04-02T09:29:18Z2021-02-15T11:33:11ZTraitDB: Web application database of phenotypic trait data.acceptedv0.9.12018-07-20 15:46:05 UTC362019-04-02 09:29:18 UTC420191201DanLeehrNational Evolutionary Synthesis Center0000-0003-3221-9579MercedesGosbyNational Evolutionary Synthesis Center10.21105/joss.01201https://doi.org/10.5281/zenodo.2609163Ruby, CoffeeScript, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.01201.pdftrait, rails, csvtag:joss.theoj.org,2005:Paper/5702018-09-23T14:37:09Z2021-02-15T11:33:10ZGBÂ code: A grain boundary generation codeacceptedv1.0.02018-07-26 15:40:34 UTC292018-09-23 14:37:09 UTC32018900R.HadianMax-Planck-Institut fuer Eisenforschung, Duesseldorf, Germany0000-0002-9616-4602B.GrabowskiMax-Planck-Institut fuer Eisenforschung, Duesseldorf, Germany0000-0003-4281-5665J.NeugebauerMax-Planck-Institut fuer Eisenforschung, Duesseldorf, Germany10.21105/joss.00900https://doi.org/10.5281/zenodo.1433530Pythonhttps://joss.theoj.org/papers/10.21105/joss.00900.pdfgrain boundary, crystallography, CSL, atomistic simulations (VASP, LAMMPS)tag:joss.theoj.org,2005:Paper/1482018-01-12T13:51:35Z2021-02-15T11:34:16ZhighlightHTML: CSS Formatting of R Markdown Documentsacceptedv 0.1.32017-01-31 20:27:56 UTC212018-01-12 13:51:35 UTC32018185BrandonLeBeauUniversity of Iowa0000-0002-1265-876110.21105/joss.00185https://doi.org/10.5281/zenodo.1146049Rhttps://joss.theoj.org/papers/10.21105/joss.00185.pdfreproducible researchtag:joss.theoj.org,2005:Paper/1792017-04-06T00:00:00Z2021-02-15T11:34:11ZgetCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in Raccepted0.1.52017-04-04 11:07:32 UTC122017-04-06 00:00:00 UTC22017230AdamH.SparksUniversity of Southern Queensland, Centre for Crop Health, Toowoomba Queensland 4350, Australia0000-0002-0061-835910.21105/joss.00230https://doi.org/10.5281/zenodo.466812Rhttps://joss.theoj.org/papers/10.21105/joss.00230.pdfclimate, applied climatology, high resolution surface, data