tag:joss.theoj.org,2005:/papers/tagged/computer%20simulationJournal of Open Source Software2024-03-05T10:10:26ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44002024-03-05T10:10:26Z2024-03-06T00:00:49ZWorldDynamics.jl: A Julia Package for Developing and Simulating Integrated Assessment Modelsacceptedv0.4.22023-04-13 20:15:11 UTC952024-03-05 10:10:26 UTC920245772PierluigiCrescenziGran Sasso Science Institute, L’Aquila, Italy, COATI, INRIA d’Université Côte d’Azur, Sophia Antipolis, France0000-0001-8789-3195EmanueleNataleCOATI, INRIA d’Université Côte d’Azur, Sophia Antipolis, France0000-0002-8755-3892AuroraRossiCOATI, INRIA d’Université Côte d’Azur, Sophia Antipolis, France0009-0001-3302-0468PauloBrunoSerafimGran Sasso Science Institute, L’Aquila, Italy0000-0002-5980-814910.21105/joss.05772https://doi.org/10.5281/zenodo.10684579Juliahttps://joss.theoj.org/papers/10.21105/joss.05772.pdfIntegrated Assessment Model, Modeling and Simulation, Scientific Computingtag:joss.theoj.org,2005:Paper/48432024-01-07T20:40:46Z2024-01-08T00:00:30ZJobflow: Computational Workflows Made Simpleaccepted0.1.142023-10-10 17:26:07 UTC932024-01-07 20:40:46 UTC920245995AndrewS.RosenDepartment of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA, Materials Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0002-0141-7006MaxGallantDepartment of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA, Materials Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0009-0008-4099-6144JanineGeorgeFederal Institute for Materials Research and Testing, Department Materials Chemistry, Berlin, Germany, Friedrich Schiller University Jena, Institute of Condensed Matter Theory and Solid-State Optics, Jena, Germany0000-0001-8907-0336JanoshRiebesellMaterials Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA, Department of Physics, University of Cambridge, Cambridge, UK0000-0001-5233-3462HrushikeshSahasrabuddheDepartment of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA, Energy Storage and Distributed Resources Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0001-7346-4568Jimmy-XuanShenMaterials Science Division, Lawrence Livermore National Laboratory, Livermore, CA, USA0000-0002-2743-7531MingjianWenWilliam A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, USA0000-0003-0013-575XMatthewL.EvansMatgenix SRL, rue Armand Bury 185, 6534 Gozée, Belgium, Institut de la Matière Condensée et des Nanosciences, Université catholique de Louvain, Chemin des Étoiles 8, Louvain-la-Neuve 1348, Belgium0000-0002-1182-9098GuidoPetrettoMatgenix SRL, rue Armand Bury 185, 6534 Gozée, BelgiumDavidWaroquiersMatgenix SRL, rue Armand Bury 185, 6534 Gozée, Belgium, Institut de la Matière Condensée et des Nanosciences, Université catholique de Louvain, Chemin des Étoiles 8, Louvain-la-Neuve 1348, Belgium0000-0001-8943-9762Gian-MarcoRignaneseMatgenix SRL, rue Armand Bury 185, 6534 Gozée, Belgium, Institut de la Matière Condensée et des Nanosciences, Université catholique de Louvain, Chemin des Étoiles 8, Louvain-la-Neuve 1348, Belgium, School of Materials Science and Engineering, Northwestern Polytechnical University, No. 127 Youyi West Road, Xi’an 710072 Shaanxi, PR China0000-0002-1422-1205KristinA.PerssonDepartment of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA, Materials Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA, Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0002-7212-6310AnubhavJainEnergy Storage and Distributed Resources Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA0000-0001-5893-9967AlexM.GanoseDepartment of Chemistry, Imperial College London, London, UK0000-0002-4486-332110.21105/joss.05995https://doi.org/10.5281/zenodo.10466868Pythonhttps://joss.theoj.org/papers/10.21105/joss.05995.pdfWorkflowstag:joss.theoj.org,2005:Paper/43722023-10-15T19:50:50Z2023-10-16T09:42:21ZBASICO: A simplified Python interface to COPASIacceptedv0.482023-03-29 21:23:27 UTC902023-10-15 19:50:50 UTC820235553FrankT.BergmannBioQUANT/COS, Heidelberg University, Heidelberg, Germany0000-0001-5553-470210.21105/joss.05553https://doi.org/10.5281/zenodo.8189386Pythonhttps://joss.theoj.org/papers/10.21105/joss.05553.pdfsystems biology, computational modeling, simulation, COPASItag:joss.theoj.org,2005:Paper/44952023-07-31T20:59:26Z2023-08-01T08:54:15ZCRATE: A Python package to perform fast material simulationsacceptedv1.0.22023-05-18 21:14:00 UTC872023-07-31 20:59:26 UTC820235594BernardoP.FerreiraSchool of Engineering, Brown University, United States of America, Faculty of Engineering, University of Porto, Portugal0000-0001-5956-3877F.M. AndradePiresFaculty of Engineering, University of Porto, Portugal0000-0002-4802-6360MiguelA.BessaSchool of Engineering, Brown University, United States of America0000-0002-6216-035510.21105/joss.05594https://doi.org/10.5281/zenodo.8199879Pythonhttps://joss.theoj.org/papers/10.21105/joss.05594.pdfcomputational mechanics, material simulation, homogenization, clusteringtag:joss.theoj.org,2005:Paper/37322023-04-05T12:33:29Z2023-04-06T00:03:30ZRTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Methodacceptedv1.0.12022-07-20 06:49:04 UTC842023-04-05 12:33:29 UTC820234763ChristofObertscheiderAerospace Engineering Department, University of Applied Sciences Wiener Neustadt, Johannes-Gutenberg-Straße 3, 2700, Wiener Neustadt, AustriaEwaldFausterProcessing of Composites Group, Department Polymer Engineering and Science, Montanuniversität Leoben, Otto Glöckl-Straße 2, 8700 Leoben, Austria10.21105/joss.04763https://doi.org/10.5281/zenodo.7799266Juliahttps://joss.theoj.org/papers/10.21105/joss.04763.pdfComputational Fluid Dynamics (CFD), Shell mesh, Resin Transfer moulding (RTM), Liquid composite moulding (LCM), Filling simulationtag:joss.theoj.org,2005:Paper/39812023-04-02T06:32:18Z2023-04-03T00:02:57ZCiclope: micro Computed Tomography to Finite Elementsacceptedv1.2.02022-10-26 13:55:30 UTC842023-04-02 06:32:18 UTC820234952GianlucaIoriSynchrotron-light for Experimental Science and Applications in the Middle East, Allan, Jordan0000-0001-8611-3281GianluigiCrimiIRCCS Istituto Ortopedico Rizzoli, Bologna, ItalyEnricoSchileoIRCCS Istituto Ortopedico Rizzoli, Bologna, Italy0000-0003-3515-1231FulviaTaddeiIRCCS Istituto Ortopedico Rizzoli, Bologna, Italy0000-0002-8342-7434GiuliaFraterrigoIRCCS Istituto Ortopedico Rizzoli, Bologna, ItalyMartinoPaniSchool of Mechanical and Design Engineering, University of Portsmouth, United Kingdom0000-0002-5786-446210.21105/joss.04952https://doi.org/10.5281/zenodo.7716943MATLAB, Jupyter Notebook, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04952.pdfcomputed tomography, finite elements, image processing, engineering, simulation, biomechanicstag:joss.theoj.org,2005:Paper/29842022-07-05T15:52:45Z2022-07-06T00:01:06ZBCImat: a Matlab-based framework for Intracortical Brain-Computer Interfaces and their simulation with an artificial spiking neural networkacceptedv.1.0.02021-08-20 13:08:03 UTC752022-07-05 15:52:45 UTC720223956EnricoFerreaGerman Primate Center, Sensorimotor Group, Goettingen, Germany, Institute for Neuromodulation and Neurotechnology, University Hospital and University of Tuebingen, Tuebingen, GermanyPierreMorelGerman Primate Center, Sensorimotor Group, Goettingen, Germany, Univ. Littoral Côte d’Opale, Univ. Artois, Univ. Lille, ULR 7369 - URePSSS - Unité de Recherche Pluridisciplinaire Sport Santé Société, F-62100 Calais, FranceAlexanderGailGerman Primate Center, Sensorimotor Group, Goettingen, Germany, University of Goettingen, Georg-Elias-Mueller Institute of Psychology, Goettingen, Germany, Bernstein Center for Computational Neuroscience, Goettingen, Germany10.21105/joss.03956https://doi.org/10.5281/zenodo.6759182MATLAB, C++https://joss.theoj.org/papers/10.21105/joss.03956.pdfMatlab, Brain-Computer Interface, Closed-Loop, Motor Controltag:joss.theoj.org,2005:Paper/34092022-06-14T21:26:52Z2022-06-15T00:00:34ZBioDeg: A finite element software for the simulation of the corrosion and biodegradation process in metallic biomaterialsacceptedv0.82022-03-03 22:54:40 UTC742022-06-14 21:26:52 UTC720224281MojtabaBarzegariBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium0000-0002-1456-0610LiesbetGerisBiomechanics Section, Department of Mechanical Engineering, KU Leuven, Belgium, Biomechanics Research Unit, GIGA in Silico Medicine, University of Liège, Belgium0000-0002-8180-144510.21105/joss.04281https://github.com/mbarzegary/BioDeg-UI/releases/tag/v0.8.1C++https://joss.theoj.org/papers/10.21105/joss.04281.pdfcomputer simulation, finite element method, corrosion process, partial differential equation, biomaterialstag:joss.theoj.org,2005:Paper/25472022-04-25T14:32:29Z2022-04-25T15:42:08ZPySDM v1: particle-based cloud modeling package for warm-rain microphysics and aqueous chemistryacceptedv12021-03-31 18:49:42 UTC722022-04-25 14:32:29 UTC720223219PiotrBartmanFaculty of Mathematics and Computer Science, Jagiellonian University, Kraków, Poland0000-0003-0265-6428OleksiiBulenokFaculty of Mathematics and Computer Science, Jagiellonian University, Kraków, Poland0000-0003-2272-8548KamilGórskiFaculty of Mathematics and Computer Science, Jagiellonian University, Kraków, PolandAnnaJarugaDepartment of Environmental Science and Engineering, California Institute of Technology, Pasadena, CA, USA0000-0003-3194-6440GrzegorzŁazarskiFaculty of Mathematics and Computer Science, Jagiellonian University, Kraków, Poland, Faculty of Chemistry, Jagiellonian University, Kraków, Poland0000-0002-5595-371XMichaelA.OlesikFaculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Kraków, Poland0000-0002-6319-9358BartoszPiaseckiFaculty of Mathematics and Computer Science, Jagiellonian University, Kraków, PolandClareE.SingerDepartment of Environmental Science and Engineering, California Institute of Technology, Pasadena, CA, USA0000-0002-1708-0997AleksandraTalarFaculty of Mathematics and Computer Science, Jagiellonian University, Kraków, PolandSylwesterArabasUniversity of Illinois at Urbana-Champaign, Urbana, IL, USA, Faculty of Mathematics and Computer Science, Jagiellonian University, Kraków, Poland0000-0003-2361-008210.21105/joss.03219https://doi.org/10.5281/zenodo.6321270Pythonhttps://joss.theoj.org/papers/10.21105/joss.03219.pdfphysics-simulation, monte-carlo-simulation, gpu-computing, atmospheric-modeling, particle-system, numba, thrust, nvrtc, pint, atmospheric-physicstag:joss.theoj.org,2005:Paper/33182022-04-12T18:05:07Z2022-04-13T00:01:12Ztesliper: a theoretical spectroscopist's little helperaccepted0.9.02022-02-02 15:18:26 UTC722022-04-12 18:05:07 UTC720224164MichałM.WięcławInstitute of Organic Chemistry, Polish Academy of Sciences0000-0001-7884-898210.21105/joss.04164https://doi.org/10.5281/zenodo.6448370Pythonhttps://joss.theoj.org/papers/10.21105/joss.04164.pdfchemistry, spectroscopy, Gaussian, chemical computing, optical spectroscopy, spectral simulations, workflow automation, batch processing