JOSS Papers: computational biology

All Papers
4039
 Published Papers
3597
 Active Papers
441
published Published 11 days ago

The Pulmonary Agent-based Infection simulator (PAI): A Multi-Scale Agent-Based Model of Pulmonary Host-Pathogen Interactions

C++ Python
@deassisinfo
10.21105/joss.10245
published Published 9 months ago

Improving reproducibility of cheminformatics workflows with chembl-downloader

Jupyter Notebook Python
@cthoyt
10.21105/joss.08844
published Published over 1 year ago

APackOfTheClones: Visualization of clonal expansion with circle packing

R C++
@Qile0317
10.21105/joss.06868
published Published over 1 year ago

anndata: Access and store annotated data matrices

Python
@falexwolf
10.21105/joss.04371
published Published almost 2 years ago

scribl: A system for the semantic capture of relationships in biological literature

Python
@alexlancaster
10.21105/joss.06645
published Published over 2 years ago

cellanneal: A user-friendly deconvolution software for transcriptomics data

Python
@libuchauer
10.21105/joss.05610
published Published over 2 years ago

BASICO: A simplified Python interface to COPASI

Python
@fbergmann
10.21105/joss.05553
published Published about 3 years ago

mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra

Python
@WSDeWitt
10.21105/joss.05227
published Published over 3 years ago

simcardems: A FEniCS-based cardiac electro-mechanics solver

Python
@finsberg
10.21105/joss.04753
published Published about 6 years ago

OrNet - a Python Toolkit to Model the Diffuse Structure of Organelles as Social Networks

Python
@Marcdh3
10.21105/joss.01983
Displaying papers 1 - 10 of 18 in total

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ISSN 2475-9066