tag:joss.theoj.org,2005:/papers/tagged/complex%20systemsJournal of Open Source Software2024-02-29T21:34:54ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/51272024-02-29T21:34:54Z2024-03-01T00:00:22ZCoSApp: a Python library to create, simulate and design complex systems.acceptedv0.15.32024-01-23 12:22:22 UTC942024-02-29 21:34:54 UTC920246292ÉtienneLacSafran Tech, Digital Sciences & Technologies Department, France0000-0002-6964-0044GuySpiegeleertwiinIT, France0009-0005-9828-0550AdrienDelsalletwiinIT, France0009-0001-8126-4045FrédéricCollonvalWebScIT, France0009-0000-3579-3424Duc-TrungLêQuantStack, France0009-0000-0415-8399MathiasMalandainInria centre at Rennes University, France0000-0001-9740-491410.21105/joss.06292https://doi.org/10.5281/zenodo.10722403Python, C#, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06292.pdfMultidisciplinary Design Analysis and Optimization, System designtag:joss.theoj.org,2005:Paper/41732023-03-26T19:04:39Z2023-03-27T00:03:22ZMelodie: Agent-based Modeling in Pythonacceptedv0.6.02023-01-21 11:43:17 UTC832023-03-26 19:04:39 UTC820235100SongminYuFraunhofer Institute for Systems and Innovation Research, Germany0000-0001-6062-4382ZhanyiHouSchool of Reliability and Systems Engineering, Beihang University, China0000-0001-8524-537010.21105/joss.05100https://doi.org/10.5281/zenodo.7771397Python, Cython, Chttps://joss.theoj.org/papers/10.21105/joss.05100.pdfagent-based modeling, complex system, automatic calibration, evolutionary trainingtag:joss.theoj.org,2005:Paper/41542023-03-05T11:43:18Z2023-10-04T15:45:15ZMultilayerGraphs.jl: Multilayer Network Science in Juliaaccepted1.1.12023-01-07 16:18:32 UTC832023-03-05 11:43:18 UTC820235116ClaudioMoroniUniversity of Turin, Italy, Interdisciplinary Physics Team, Italy0000-0003-1274-6937PietroMonticoneUniversity of Turin, Italy, Interdisciplinary Physics Team, Italy0000-0002-2731-962310.21105/joss.05116https://doi.org/10.5281/zenodo.7697094Juliahttps://joss.theoj.org/papers/10.21105/joss.05116.pdfGraphs, Networks, Complexity, Complex-Networks, Complex-Systems, Network-Science, Network-Analysis, Multilayer-Graphs, Multilayer-Networkstag:joss.theoj.org,2005:Paper/29112021-11-10T17:17:58Z2021-11-11T01:39:26ZCellPyLib: A Python Library for working with Cellular Automataacceptedv1.0.02021-07-30 01:53:50 UTC672021-11-10 17:17:58 UTC620213608LuisM.AntunesDepartment of Chemistry, University of Reading, Whiteknights, Reading RG6 6DX, United Kingdom0000-0002-4867-563510.21105/joss.03608https://doi.org/10.6084/m9.figshare.16977619Pythonhttps://joss.theoj.org/papers/10.21105/joss.03608.pdfCellular Automata, complex systems, non-linear dynamics, discrete dynamical systemstag:joss.theoj.org,2005:Paper/23432021-06-22T22:53:21Z2021-06-24T17:29:44ZAgentPy: A package for agent-based modeling in Pythonacceptedv0.0.62021-01-16 16:59:04 UTC622021-06-22 22:53:21 UTC620213065JoëlForamittiInstitute of Environmental Science and Technology, Universitat Autònoma de Barcelona, Spain, Institute for Environmental Studies, Vrije Universiteit Amsterdam, The Netherlands0000-0002-4828-728810.21105/joss.03065https://doi.org/10.5281/zenodo.4946508Pythonhttps://joss.theoj.org/papers/10.21105/joss.03065.pdfAgent-based modeling, Complex systems, Computer simulation, Interactive computingtag:joss.theoj.org,2005:Paper/20252020-11-16T14:00:46Z2021-02-15T11:29:58ZDE-Sim: an object-oriented, discrete-event simulation tool for data-intensive modeling of complex systems in Pythonaccepted0.1.12020-09-09 23:42:08 UTC552020-11-16 14:00:46 UTC520202685ArthurP.GoldbergIcahn Institute for Data Science and Genomic Technology and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA0000-0003-2772-1484JonathanR.KarrIcahn Institute for Data Science and Genomic Technology and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA0000-0002-2605-508010.21105/joss.02685https://doi.org/10.5281/zenodo.4274852Python, Jupyter Notebook, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.02685.pdfdynamical modeling, simulation, discrete-event simulation, object-oriented simulation, parallel discrete-event simulation, biochemical modeling, whole-cell modelingtag:joss.theoj.org,2005:Paper/15772020-09-02T00:00:00Z2022-08-25T16:35:40ZUtopia: A Comprehensive and Collaborative Modeling Framework for Complex and Evolving Systemsacceptedlatest2020-03-07 19:20:06 UTC532020-09-02 00:00:00 UTC520202165LukasRiedelInstitute of Environmental Physics, Heidelberg University, Germany, Interdisciplinary Center for Scientific Computing, Heidelberg University, Germany, Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Heidelberg University, Germany0000-0002-4667-3652BenjaminHerdeanuInstitute of Environmental Physics, Heidelberg University, Germany, Heidelberg Graduate School for Physics, Heidelberg University, Germany0000-0001-6343-3004HaraldMackInstitute of Environmental Physics, Heidelberg University, Germany0000-0001-7787-9496YunusSevinchanInstitute of Environmental Physics, Heidelberg University, Germany0000-0003-3858-0904JulianWeningerDepartment of Biochemistry, University of Geneva, Switzerland10.21105/joss.02165https://doi.org/10.5281/zenodo.4011979C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02165.pdfComplex Systems, Agent-based Models, Modeling Framework, Computational Science, Docker, GitLab, HDF5, YAML