JOSS Papers: command line

All Papers
4012
 Published Papers
3562
 Active Papers
449
published Published 11 days ago

PileupCaller: A command-line tool to sample genotypes from low-coverage sequencing data of ancient DNA

Haskell D Python
@stschiff
10.21105/joss.08634
published Published 5 months ago

ForeFire: A Modular, Scriptable C++ Simulation Engine and Library for Wildland-Fire Spread

C++ C Python
@filippi
10.21105/joss.08680
published Published over 1 year ago

Snk: A Snakemake CLI and Workflow Management System

Python
@wytamma
10.21105/joss.07410
published Published almost 2 years ago

IonDiff: command-line tool to identify ionic diffusion events and hopping correlations in molecular dynamics simulations

Python
@IonRepo
10.21105/joss.06616
published Published over 2 years ago

Fasten: a toolkit for streaming operations on fastq files

Rust
@lskatz
10.21105/joss.06030
published Published about 3 years ago

SPyCi-PDB: A modular command-line interface for back-calculating experimental datatypes of protein structures.

Python
@menoliu
10.21105/joss.04861
published Published almost 5 years ago

DataLad: distributed system for joint management of code, data, and their relationship

@yarikoptic
10.21105/joss.03262
published Published almost 5 years ago

Bacting: a next generation, command line version of Bioclipse

Java
@egonw
10.21105/joss.02558
published Published about 5 years ago

kallisto: A command-line interface to simplify computational modelling and the generation of atomic features

Python
@f3rmion
10.21105/joss.03050
published Published almost 6 years ago

taurenmd: A command-line interface for analysis of Molecular Dynamics simulations.

Python
@joaomcteixeira
10.21105/joss.02175
Displaying papers 1 - 10 of 15 in total

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