tag:joss.theoj.org,2005:/papers/tagged/cancer%20genomicsJournal of Open Source Software2020-10-01T19:54:19ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/18022020-10-01T19:54:19Z2021-02-15T11:30:25Zcerebra: A tool for fast and accurate summarizing of variant calling format (VCF) filesacceptedv1.1.02020-06-25 17:55:14 UTC542020-10-01 19:54:19 UTC520202432LincolnHarrisChan Zuckerberg Biohub, San Francisco, CA, United States0000-0003-2544-4225RohanVanheusdenChan Zuckerberg Biohub, San Francisco, CA, United StatesOlgaBotvinnikChan Zuckerberg Biohub, San Francisco, CA, United States0000-0003-4412-7970SpyrosDarmanisChan Zuckerberg Biohub, San Francisco, CA, United States0000-0003-4002-815810.21105/joss.02432https://doi.org/10.5281/zenodo.4050557Pythonhttps://joss.theoj.org/papers/10.21105/joss.02432.pdfpython, genomics, variant calling, VCF, single-cell, cancertag:joss.theoj.org,2005:Paper/11442019-08-05T11:48:32Z2021-02-15T11:31:50ZThe UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seqacceptedv1.2.52019-08-02 09:49:13 UTC402019-08-05 11:48:32 UTC420191627ShixiangWangSchool of Life Science and Technology, ShanghaiTech University, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences0000-0001-9855-7357XuesongLiuSchool of Life Science and Technology, ShanghaiTech University0000-0002-7736-007710.21105/joss.01627https://doi.org/10.5281/zenodo.3358530R, XQueryhttps://joss.theoj.org/papers/10.21105/joss.01627.pdfcancer genomics, data accesstag:joss.theoj.org,2005:Paper/3072017-12-06T23:44:35Z2021-02-15T11:33:49ZA framework for generating interactive reports for cancer genome analysisaccepted0.5.52017-11-13 08:28:12 UTC202017-12-06 23:44:35 UTC22017457AiOkadaLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan0000-0002-9782-5900KenichiChibaLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, JapanHirokoTanakaLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, JapanSatoruMiyanoLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, JapanYuichiShiraishiLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan0000-0001-6144-584510.21105/joss.00457https://doi.org/10.5281/zenodo.1083949Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.00457.pdfBioinformatics, Visualization, Cancer Genome